MmuEX0020612 @ mm10
Exon Skipping
Gene
ENSMUSG00000036401 | Glt6d1
Description
glycosyltransferase 6 domain containing 1 [Source:MGI Symbol;Acc:MGI:1918353]
Coordinates
chr2:25795144-25811055:-
Coord C1 exon
chr2:25811008-25811055
Coord A exon
chr2:25795411-25795602
Coord C2 exon
chr2:25795144-25795281
Length
192 bp
Sequences
Splice sites
3' ss Seq
TGTTTGTTTATATTGATTAGCTG
3' ss Score
3.2
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
Exon sequences
Seq C1 exon
GAACCACCAGGAAGAGGAACTTCTGCTCTCAGACTGGTTTAACCCCAG
Seq A exon
CTGTAATCAGAGCTCAGGAGGAAGAGAACACACAGTCTGAGGCTCGACTGACTTTGCCAGCTCAGCCACTCACTAGTTGTGTGCCCACATGAAGAACAAGAAGAAAGCTAGCAGTCATCTGGGGACGGGCATTGCCAGGGTCATGTGAGCAAGTGAGGGCTCCGCACATCTGACTGCTCAGTGCCATCTCAG
Seq C2 exon
GAGACGCCTGGATGTCATCACGACCACAGACTGGCTGGCCCCCATCATATGGGAAGGCACCTTTGACAGAAAGGTCCTGGAGACATATTTCAGGAAGCAGAACATCACCGTGGGTTTGGCTGTGTTTGCTGTTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036401_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.231 C2=0.000
Domain overlap (PFAM):
C1:
PF034148=Glyco_transf_6=FE(5.5=100)
A:
NA
C2:
PF034148=Glyco_transf_6=FE(15.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACCACCAGGAAGAGGAACT
R:
AACAGCAAACACAGCCAAACC
Band lengths:
181-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types