MmuINT0011194 @ mm9
Intron Retention
Gene
ENSMUSG00000014852 | Adamts13
Description
a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 13 [Source:MGI Symbol;Acc:MGI:2685556]
Coordinates
chr2:26836589-26837345:+
Coord C1 exon
chr2:26836589-26836735
Coord A exon
chr2:26836736-26837182
Coord C2 exon
chr2:26837183-26837345
Length
447 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCAG
5' ss Score
4.95
3' ss Seq
CTCTTCCTGATCTGTCACAGCAC
3' ss Score
6.97
Exon sequences
Seq C1 exon
CTTCGGGCTGGACCATGATGGTGCTCCAGGTAGTGGCAGCACCTGCAAGGCCAGTGGCCACGTGATGGCGGCTGATGGCGCAACACCTACTGGAGGGACCCTGGAGTGGTCTGCCTGCAGCCAAAGGCAGTTGCAGCACCTACTCAG
Seq A exon
GTGCAGCCTCCACCTAGGACAGCAGGGTGGGCTGTCACTCTCACCCTGCCCAGCAGCCTTCACCCCATCCCACTCTTTGCTATTATTCCCTGTCTCCAACCCCACTCTGCTCCCCCATCAATTCCTCCATCCCCTCCAATCCCTCCTCTCTCATCTTCCCCACTTTCTTGAACCCACTCTCCTATCCTATCCCACTCCTGGGCCCACCCCTCAATTGTCCCTTGTTCTCTACCTCCCCTGCTTCTTCCTTCCACACTTCCATGACAGACCTTTCCTGTCCATTGGTCTGTGGCCTTCTCCTCCATCCCCCTCCCAGCCCCACTACCTGCTCCATTCTATACTCTGTTGGGCCTCTACCCAGCTAATATCCCCAGCCCCACATCTGCTATTTTACGCTGACCCCACTGGTGTCCACTCAGGTTTTGAGCTCTTCCTGATCTGTCACAG
Seq C2 exon
CACAGGGCAAATGCACTGCTTCCAGGACCCACCTGGGCTGCAGTCAGGACTTACACGGCACCAGCTGATGGCACAGCCTGGCCTCTACTACAGTGCAGATGATCAGTGCCGTGTGGCTTTCGGTTCTGGGGCTGTCGCCTGCACCTTCTCCAGGGAGGGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000014852-Adamts13:NM_001001322:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=NA C2=0.036
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(23.6=100)
A:
NA
C2:
PF0142114=Reprolysin=PD(5.3=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGGCTGGACCATGATG
R:
CAGACCCTCCCTGGAGAAGG
Band lengths:
310-757
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: