DreINT0026251 @ danRer10
Intron Retention
Gene
ENSDARG00000076270 | adamts13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:ZFIN;Acc:ZDB-GENE-070814-7]
Coordinates
chr8:45263757-45264352:-
Coord C1 exon
chr8:45264218-45264352
Coord A exon
chr8:45263908-45264217
Coord C2 exon
chr8:45263757-45263907
Length
310 bp
Sequences
Splice sites
5' ss Seq
CAGGTGTCA
5' ss Score
1.32
3' ss Seq
GTTCGTTCTCTGCTATGTAGAGC
3' ss Score
5.35
Exon sequences
Seq C1 exon
TTTTGGGATAAATCATGATGGAATAGATAACACATGCAGCTCTAGTGGCTTTATGATGGCATCTGATGGAGGTTATAACAGCGTCGATCTCACCTGGTCCCAATGCAGCAGGGCTCAGCTCTACAGCTTCTTCAG
Seq A exon
GTGTCACTCACTAAATTCATCTTTTTATTATATATATGTTTTTTAGCTTTCTTTGCAGCATTAAAAATTTAAATCATTGGTGGAGCTGCTGAAAATTCCCATCACCTAAATATATTACATAAAATATATTACAATAGAATCATTAATAATAATGCTGTTTTTACTACATTTTCAAAAAGACAGCCTGTGTGTGTTAGAGACTTCTTTCAATTTTTTTTGCTTTTAAATCTTACAGACAAAACCAAAATAACTTTTTTTCATAATGAGAGTTTTCCTCCTAACATGATTGTGTTCGTTCTCTGCTATGTAG
Seq C2 exon
AGCTGGTAAGGCAGAGTGTGTTCAGGATGTGCCAGTGTTGGGTGGTTCAGTGCAGGACTGGAGGCCTGGTCTTTTCTATGGAGTGGACGATCAGTGCCGTATAGCGTTTGGCAGCTCAGCAACTGCTTGCTCTTTCACTAATGAAGACATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000076270:ENSDART00000146364:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(21.4=100)
A:
NA
C2:
PF0142114=Reprolysin=PD(5.3=21.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGAATAGATAACACATGCAGCT
R:
ATGTCTTCATTAGTGAAAGAGCAAGC
Band lengths:
270-580
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]