BtaINT0014007 @ bosTau6
Intron Retention
Gene
ENSBTAG00000015093 | ADAMTS13
Description
ADAM metallopeptidase with thrombospondin type 1 motif, 13 [Source:HGNC Symbol;Acc:HGNC:1366]
Coordinates
chr11:104385201-104385788:+
Coord C1 exon
chr11:104385201-104385347
Coord A exon
chr11:104385348-104385625
Coord C2 exon
chr11:104385626-104385788
Length
278 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCC
5' ss Score
7.13
3' ss Seq
GAACCGCGGCCTTGTCGCAGCGC
3' ss Score
4.31
Exon sequences
Seq C1 exon
CTTCGGCCTGGAGCACGATGGCGTGCCGGGCAGCGGCTGCGGGCCCAGCGGCCACGTGATGGCCTCGGACGGCGCGGCGCCCGCCCTCGCCCTCGGGGGCCCGGCGTGGTCCCCCTGCAGCCGCCGGCAGCTGCTGAGTCTGCTCAG
Seq A exon
GTAGCCGCGCCCCCGCCCCGCCCCTCCCTACGCCCGCATCTGGCTCCGCGCGCCCCGCTCCTCCGCCCCGGCCCAGCCCTCCAGCGGCCCTCCGCTCGGTGTCCGCTCCCGTCGCGGCCCCAGTCCACCTCTCCTTGGGCTCGCGGCCCGTCTCGGGGGGCACCCCTCCATCTCGGCCTTCCTCGCCCTCACCTCCGGTGCCCACCCGCCCATCCCGCCCCCTCCCGGGGTCCCCCACCCGGGGTCCACCCCCGGCCTGAACCGCGGCCTTGTCGCAG
Seq C2 exon
CGCAGGACGGGCGCGCTGCTTGTGGGACCCTCCGGGGCCGCTGTCCGGGCCCGCGGGGCAGCCTCCCGAGGTGCAGCCCGGCCTCTACTACGGCGCAGACGAGCAGTGCCGCGTCGCCTTCGGCCCCACGGCGGTCGCCTGCACCTTCCGCGGGGAGCACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015093:ENSBTAT00000020085:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF0142114=Reprolysin=FE(23.6=100)
A:
NA
C2:
PF0142114=Reprolysin=PD(5.3=20.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCGGCCTGGAGCACGAT
R:
TGCTCGTCTGCGCCGTAG
Band lengths:
252-530
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development