MmuEX0012975 @ mm9
Exon Skipping
Gene
ENSMUSG00000044647 | Csrnp3
Description
cysteine-serine-rich nuclear protein 3 [Source:MGI Symbol;Acc:MGI:1925021]
Coordinates
chr2:65716022-65840619:+
Coord C1 exon
chr2:65716022-65716109
Coord A exon
chr2:65787016-65787186
Coord C2 exon
chr2:65840360-65840619
Length
171 bp
Sequences
Splice sites
3' ss Seq
GTTGCTCATTCCCACTCCAGGTA
3' ss Score
8.52
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAAAAAATAAGAGGATATCAAGAGGCTGAAAGAATATTTTCAGAAGCATAGACTCTTCGGAGGATACTGCAGTTCATGAGATCTCAAG
Seq A exon
GTACATGTGACAACGCCGCAGCTATGAGTGGAATTTTAAAGAGGAAGTTCGAAGATGTGGACGCCTCCTCACCATGCTCCTCTGCTCGGGAATCGGATGATGAAGTCTCCAGCAGCGAAAGTGCTGACAGCGGGGATAGCGTCAATCCATCCACCTCAAATCACTTCACCC
Seq C2 exon
CTTCCTCCATCCTGAAAAGGGAGAAACGGCTGAGGACGAAGAATGTACACTTCAGCTGTGTCACCGTGTACTACTTCACCAGGAGGCAGGGCTTCACTAGTGTGCCCAGCCAGGGTGGCAGCACTCTGGGGATGTCCAGTCGTCACAACAGCGTGCGCCAGTACACCCTGGGCGAGTTTGCGCGAGAGCAGGAGCGCCTGCACCGGGAGATGCTGAGAGAACACCTCCGGGAGGAGAAACTCAACTCTCTCAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044647-'2-10,'2-9,10-10
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.712 C2=0.420
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGTTCATGAGATCTCAAG
R:
GTGTTCTCTCAGCATCTCCCG
Band lengths:
247-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: