BtaEX0010267 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000039091 | CSRNP3
Description
Bos taurus cysteine-serine-rich nuclear protein 3 (CSRNP3), mRNA. [Source:RefSeq mRNA;Acc:NM_001076244]
Coordinates
chr2:30734516-30875277:-
Coord C1 exon
chr2:30875177-30875277
Coord A exon
chr2:30791931-30792101
Coord C2 exon
chr2:30734516-30734775
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGCTCCCGTTCCTGTTACAGGTA
3' ss Score
11.78
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
TCTTTTTTAAGGAAAAAATAAAGGCAATATCAACAGACTGAAAAGATGTTTTCAGAGGCGTAGCGTCTTCAGGGAGATACTGGCATTCATGAGATCTCAAG
Seq A exon
GTACATGTGACAGCGCTGCAGCGATGAGTGGAATTTTAAAGAGGAAGTTTGAAGAAGTTGACGGCTCCTCGCCCTGCTCCTCTGTGCGGGAATCAGATGATGAAGTTTCCAGCAGTGAAAGCGCTGACAGTGGGGACAGTGTCAATCCATCCACTTCTAATCATTTTCCCC
Seq C2 exon
CTTCCTCCATCCTCAAAAGAGAGAAGCGGCTGAGGACCAAGAATGTGCATTTCAGTTGCGTCACTGTGTACTACTTCACCAGGAGGCAGGGCTTCACGAGTGTGCCCAGCCAGGGCGGCAGCACCCTGGGCATGTCCAGCCGCCACAACAGCGTGCGCCAGTACACCCTGGGCGAATTTGCCAGAGAGCAGGAGAGGCTCCACCGTGAGATGCTGAGAGAACACCTCAGGGAGGAAAAACTGAACTCTCTAAAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000039091-'2-6,'2-3,5-6
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.740 C2=0.414
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTTCAGGGAGATACTGGC
R:
TCTCAGCATCTCACGGTGGAG
Band lengths:
256-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development