GgaEX1017934 @ galGal4
Exon Skipping
Gene
ENSGALG00000010971 | CSRNP3
Description
cysteine-serine-rich nuclear protein 3 [Source:HGNC Symbol;Acc:HGNC:30729]
Coordinates
chr7:19233612-19285907:-
Coord C1 exon
chr7:19285807-19285907
Coord A exon
chr7:19244665-19244835
Coord C2 exon
chr7:19233612-19233871
Length
171 bp
Sequences
Splice sites
3' ss Seq
TACCTCTGTTCCTCTTACAGGTG
3' ss Score
12.96
5' ss Seq
CCCGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
GCCTTGCTCCTGTGTGTGGGATTCAGATGATGACATTTCTAGCAGTGAAAGCGCTGACAGCGGAAGCAATGTCCACCCATCAGCTTCTAATCATTTTACCC
Seq A exon
GTGCATGTGACAGCATTGCAGCAATGAGCGGAATTTTGAAGAGGAAGTTTGAAGAAGTTGATGGCTCCTCACCTTGCTCCTCTGTACGGGAATCAGACGATGACATTTCTAGCAGTGAAAGTGCTGACAGTGGTGATAGTGTCAATCCATCTACTTCTAATCACTTTACCC
Seq C2 exon
CTTCTTCGATCCTGAAGAGAGAAAAGCGGAAGAGAACAAAAAATGTCCATTTTAACTGTGTTACTGTGTATTACTTCACGAGAAGGCAAGGCTTCACCAGTGTTCCCAGCCAAGGGGGAAGCACGCTGGGAATGTCCACTCGCCACAACAGTGTGCGCCAGTACACGCTTGGAGAGTTTGCAATGGAGCAGGAGAGGCTTCACCGGGAGATGCTGCGGGAACATCTAAGAGAAGAAAAACTCAATTCTCTAAAATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010971-'0-4,'0-1,3-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.632 C2=0.414
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTGTGTGTGGGATTCAG
R:
TGTTGTGGCGAGTGGACATTC
Band lengths:
246-417
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]