RnoEX0024993 @ rn6
Exon Skipping
Gene
ENSRNOG00000005359 | Csrnp3
Description
cysteine and serine rich nuclear protein 3 [Source:RGD Symbol;Acc:1306214]
Coordinates
chr3:51918788-52103034:+
Coord C1 exon
chr3:51918788-51918875
Coord A exon
chr3:51995348-51995518
Coord C2 exon
chr3:52102865-52103034
Length
171 bp
Sequences
Splice sites
3' ss Seq
GTTGCTCTTTCCCACTCCAGGTA
3' ss Score
9.79
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAAAAAATAAAAGGATATCAGCAGCCTGAAAGGATATTCTCAGAAGCATAGACTCTTCGGAGGATACTGAACTTCATGAGATCTCACG
Seq A exon
GTACATGTGACAGCGCCGCAGCTATGAGTGGAATTTTAAAGAGGAAGTTCGAAGATGTGGAAGCCTCCTCGCCCTGCTCCTCTGCTCGGGAATCGGATGACGAAGTCTCCAGCAGCGAAAGTGCTGACAGCGGGGATAGCGTCAATCCATCTACCTCCAATCACTTCACCC
Seq C2 exon
CTTCCTCCATCCTCAAAAGAGAGAAACGGCTGAGGACGAAGAATGTGCACTTCAGTTGTGTCACCGTGTACTACTTCACCAGGAGGCAGGGCTTCACCAGTGTGCCCAGCCAGGGTGGCAGCACTCTTGGGATGTCCAGCCGTCACAACAGCGTGCGCCAGTACACCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005359-'2-9,'2-7,6-9
Average complexity
C1
Mappability confidence:
91%=100=80%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.667 A=0.638 C2=0.421
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSRNOT00000007197fB3668
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAATAAAAGGATATCAGCAGCCTG
R:
TACTGGCGCACGCTGTTG
Band lengths:
247-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]