HsaEX6016369 @ hg19
Exon Skipping
Gene
ENSG00000178662 | CSRNP3
Description
cysteine-serine-rich nuclear protein 3 [Source:HGNC Symbol;Acc:30729]
Coordinates
chr2:166428849-166514530:+
Coord C1 exon
chr2:166428849-166429097
Coord A exon
chr2:166451553-166451723
Coord C2 exon
chr2:166514271-166514530
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCTTCCTGTTACAGGTA
3' ss Score
12.55
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
CTCAGTGAGGCTGATGCCGTGCAGCAAGCAGTAGGTAATGAGTCTTTGTGCAGAGTGAAGCTCTTGTTGCTGAACAATAAAGCATATGGTACAAGCAATAAAACACAGGGCTGGGAAATTTAAGAAGATTCCTCTGAACCAGGAAGAACTGTGTCTTCGGTGATGCTGACACATATGATAAAATGATCATTTATTTTGGATCCTAATGAATAAAGAGTGCAAGGACTAAGACTACAGTTATTTGAACAG
Seq A exon
GTACATGTGACAGCACTGCAGCGATGAGTGGAATTTTAAAGAGGAAGTTTGAAGAAGTTGACGGCTCCTCACCCTGCTCCTCTGTGAGGGAATCAGATGATGAAGTTTCCAGCAGTGAAAGTGCTGACAGTGGGGACAGTGTCAATCCATCCACTTCTAGTCATTTTACCC
Seq C2 exon
CTTCCTCCATTCTCAAAAGGGAGAAACGACTGAGGACAAAGAATGTACATTTTAGTTGTGTCACCGTGTACTACTTCACCAGGAGGCAAGGCTTCACAAGTGTGCCCAGTCAAGGGGGAAGCACCCTGGGGATGTCCAGCCGCCATAACAGCGTGCGCCAGTACACTCTTGGCGAGTTTGCAAGGGAGCAGGAGAGGCTCCACCGGGAGATGTTGAGAGAACACCTTAGGGAGGAAAAGCTGAACTCCTTAAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178662-'5-7,'5-6,7-7=AN
Average complexity
A_C2
Mappability confidence:
89%=100=75%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.708 C2=0.423
Domain overlap (PFAM):
C1:
NA
A:
PF144821=Cut8_N=PU(68.6=70.0)
C2:
PF144821=Cut8_N=PD(29.4=17.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTGTCTTCGGTGATGCTG
R:
CTGTTATGGCGGCTGGACATC
Band lengths:
253-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)