HsaEX6016369 @ hg38
Exon Skipping
Gene
ENSG00000178662 | CSRNP3
Description
cysteine and serine rich nuclear protein 3 [Source:HGNC Symbol;Acc:HGNC:30729]
Coordinates
chr2:165517873-165658020:+
Coord C1 exon
chr2:165517873-165517961
Coord A exon
chr2:165595043-165595213
Coord C2 exon
chr2:165657761-165658020
Length
171 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCTTCCTGTTACAGGTA
3' ss Score
12.55
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAAAAAATGAGGAAATATCAACAGACTGAAAATATGTTTTCAGAGGCATAGAATCTTCAGGAAAATACTGGAGTTCCTGAGATCTCAAG
Seq A exon
GTACATGTGACAGCACTGCAGCGATGAGTGGAATTTTAAAGAGGAAGTTTGAAGAAGTTGACGGCTCCTCACCCTGCTCCTCTGTGAGGGAATCAGATGATGAAGTTTCCAGCAGTGAAAGTGCTGACAGTGGGGACAGTGTCAATCCATCCACTTCTAGTCATTTTACCC
Seq C2 exon
CTTCCTCCATTCTCAAAAGGGAGAAACGACTGAGGACAAAGAATGTACATTTTAGTTGTGTCACCGTGTACTACTTCACCAGGAGGCAAGGCTTCACAAGTGTGCCCAGTCAAGGGGGAAGCACCCTGGGGATGTCCAGCCGCCATAACAGCGTGCGCCAGTACACTCTTGGCGAGTTTGCAAGGGAGCAGGAGAGGCTCCACCGGGAGATGTTGAGAGAACACCTTAGGGAGGAAAAGCTGAACTCCTTAAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178662-'8-29,'8-26,18-29
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.740 C2=0.424
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGAGTTCCTGAGATCTCA
R:
CTCTCAACATCTCCCGGTGGA
Band lengths:
242-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains