MmuEX0012975 @ mm10
Exon Skipping
Gene
ENSMUSG00000044647 | Csrnp3
Description
cysteine-serine-rich nuclear protein 3 [Source:MGI Symbol;Acc:MGI:1925021]
Coordinates
chr2:65877965-66002562:+
Coord C1 exon
chr2:65877965-65878052
Coord A exon
chr2:65948959-65949129
Coord C2 exon
chr2:66002303-66002562
Length
171 bp
Sequences
Splice sites
3' ss Seq
GTTGCTCATTCCCACTCCAGGTA
3' ss Score
8.52
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GAAAAAATAAGAGGATATCAAGAGGCTGAAAGAATATTTTCAGAAGCATAGACTCTTCGGAGGATACTGCAGTTCATGAGATCTCAAG
Seq A exon
GTACATGTGACAACGCCGCAGCTATGAGTGGAATTTTAAAGAGGAAGTTCGAAGATGTGGACGCCTCCTCACCATGCTCCTCTGCTCGGGAATCGGATGATGAAGTCTCCAGCAGCGAAAGTGCTGACAGCGGGGATAGCGTCAATCCATCCACCTCAAATCACTTCACCC
Seq C2 exon
CTTCCTCCATCCTGAAAAGGGAGAAACGGCTGAGGACGAAGAATGTACACTTCAGCTGTGTCACCGTGTACTACTTCACCAGGAGGCAGGGCTTCACTAGTGTGCCCAGCCAGGGTGGCAGCACTCTGGGGATGTCCAGTCGTCACAACAGCGTGCGCCAGTACACCCTGGGCGAGTTTGCGCGAGAGCAGGAGCGCCTGCACCGGGAGATGCTGAGAGAACACCTCCGGGAGGAGAAACTCAACTCTCTCAAACTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000044647_MULTIEX1-3/4=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.857 A=0.748 C2=0.420
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENSMUST00000122912fB8307
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCAGTTCATGAGATCTCAAG
R:
GTGTTCTCTCAGCATCTCCCG
Band lengths:
247-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types