MmuALTD0015718-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59716187-59720635:-
Coord C1 exon
chr2:59720535-59720635
Coord A exon
chr2:59720458-59720534
Coord C2 exon
chr2:59716187-59716607
Length
77 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
ACTGGTTTAAAAACTCACAGGCT
3' ss Score
4.11
Exon sequences
Seq C1 exon
GGGCTCTGCCTAGTGAGCAGCCCAGCCCAGCAGCCCAGCTCGGGGCCCAGCCCGGGGCCGAGCCCGGGGCAGTGCAGACTTGGTGACCTCAGAACCCGGAG
Seq A exon
GTGCGTGACCTCGACCCCGGAGCCGCGCAGGGGAGGAGCCGCCCGGAGGCGGGACTCTCAGTCCGGGTGCGAGGGAA
Seq C2 exon
GCTGTTTACTTTGTGTGAGGAACATGGTGAGGCTGATTCACACGCTGGCTGATCACGGTGATGACGTCAGCTGCTGCGCCTTCTCGGCTGCCCTCCTGGCCACCTGCTCCTTGGACAAGACCATCCGCCTGTACTCCCTAAGTGACTTTGCTGAACTGCCGTACTCCCCGCTGAAGTTCCACACCTATGCTGTCCACTGCTGCTGTTTCTCACCCTCAGGACACGTTTTAGCATCGTGCTCGACAGACGGGACCACGGTGCTGTGGAGCTCGCACAGCGGACACACCCTGACCGTGTTGGAGCAGCCGGGTGGCAGCCCTGTGCGCGTCTGTTGCTTTTCCCCAGACTCTGCCTACCTAGCGTCAGGGGCTGCCGATGGATCCATTGCTTTGTGGAATGCACAGACATACAAACTATATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988-0-1,1-1-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=27.1),PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=30.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGACTTGGTGACCTCAGA
R:
TTAGGGAGTACAGGCGGATGG
Band lengths:
170-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: