MmuEX0052113 @ mm9
Exon Skipping
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59712296-59720648:-
Coord C1 exon
chr2:59720535-59720648
Coord A exon
chr2:59714724-59714908
Coord C2 exon
chr2:59712296-59712385
Length
185 bp
Sequences
Splice sites
3' ss Seq
CCTTTTCTGTTCTGTTTCAGGTG
3' ss Score
14.23
5' ss Seq
CTGGTTGGT
5' ss Score
4.67
Exon sequences
Seq C1 exon
GACCCAGTGAGTCGGGCTCTGCCTAGTGAGCAGCCCAGCCCAGCAGCCCAGCTCGGGGCCCAGCCCGGGGCCGAGCCCGGGGCAGTGCAGACTTGGTGACCTCAGAACCCGGAG
Seq A exon
GTGTGGTAGTGTCAAGGATAGCTCATTGGTGGCCTGTGCGTTTTCTCCCGATGGAGGCCTCTTTGTCACTGGCTCCTCGGGCGGGGACTTGACAGTGTGGGATGACAGAATGAGGTGTCTACACAGCGAGAAGGCGCACGATCTCGGGATCACCTGCTGCAGCTTTTCCTCACAGCCTCTCTCTG
Seq C2 exon
GCGGAGAAGGCCTCCAGTCTTACCAGTTGGCGTCATGTGGTCAAGACTGTGAAATCAAACTCTGGGCTGTTACTATTACCCGTGTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988_MULTIEX1-2/3=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
C2:
PF0040027=WD40=PD(45.8=71.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACCCAGTGAGTCGGGCT
R:
AAGACACGGGTAATAGTAACAGCC
Band lengths:
202-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: