Special

MmuALTA0020122-3/3 @ mm9

Alternative 3'ss

Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59716389-59720641:-
Coord C1 exon
chr2:59720458-59720641
Coord A exon
chr2:59716589-59716644
Coord C2 exon
chr2:59716389-59716588
Length
56 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TGGATTTCCCTGATTTCTAGGGT
3' ss Score
7.4
Exon sequences
Seq C1 exon
TGAGTCGGGCTCTGCCTAGTGAGCAGCCCAGCCCAGCAGCCCAGCTCGGGGCCCAGCCCGGGGCCGAGCCCGGGGCAGTGCAGACTTGGTGACCTCAGAACCCGGAGGTGCGTGACCTCGACCCCGGAGCCGCGCAGGGGAGGAGCCGCCCGGAGGCGGGACTCTCAGTCCGGGTGCGAGGGAA
Seq A exon
GGTGACATGTGACTTTGACTGGTTTAAAAACTCACAGGCTGTTTACTTTGTGTGAG
Seq C2 exon
GAACATGGTGAGGCTGATTCACACGCTGGCTGATCACGGTGATGACGTCAGCTGCTGCGCCTTCTCGGCTGCCCTCCTGGCCACCTGCTCCTTGGACAAGACCATCCGCCTGTACTCCCTAAGTGACTTTGCTGAACTGCCGTACTCCCCGCTGAAGTTCCACACCTATGCTGTCCACTGCTGCTGTTTCTCACCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988-1-2,1-1,1-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact





	

	
5' UTR





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=NA A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NA

							
A:
NA

							
C2:
PF0040027=WD40=WD(100=27.1),PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=30.1)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000121242





     
                   









    
Main Skipping Isoform:
ENSMUSP00000028368





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000099812, ENSMUSP00000114811
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
No conservation detected
Human
(hg19)
chr2:160139638-160139639 
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
chr2:37169435-37169882 
HIGH PSI
BtaALTA0033207-4/4
(WDSUB1)
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
chr7:38183299-38183300 
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
TGCAGACTTGGTGACCTCAGA

				
R: 
GATCAGCCAGCGTGTGAATCA

				
Band lengths: 
141-197

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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