MmuALTA0020122-3/3 @ mm10
Alternative 3'ss
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59878332-59882584:-
Coord C1 exon
chr2:59882401-59882584
Coord A exon
chr2:59878532-59878587
Coord C2 exon
chr2:59878332-59878531
Length
56 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TGGATTTCCCTGATTTCTAGGGT
3' ss Score
7.4
Exon sequences
Seq C1 exon
TGAGTCGGGCTCTGCCTAGTGAGCAGCCCAGCCCAGCAGCCCAGCTCGGGGCCCAGCCCGGGGCCGAGCCCGGGGCAGTGCAGACTTGGTGACCTCAGAACCCGGAGGTGCGTGACCTCGACCCCGGAGCCGCGCAGGGGAGGAGCCGCCCGGAGGCGGGACTCTCAGTCCGGGTGCGAGGGAA
Seq A exon
GGTGACATGTGACTTTGACTGGTTTAAAAACTCACAGGCTGTTTACTTTGTGTGAG
Seq C2 exon
GAACATGGTGAGGCTGATTCACACGCTGGCTGATCACGGTGATGACGTCAGCTGCTGCGCCTTCTCGGCTGCCCTCCTGGCCACCTGCTCCTTGGACAAGACCATCCGCCTGTACTCCCTAAGTGACTTTGCTGAACTGCCGTACTCCCCGCTGAAGTTCCACACCTATGCTGTCCACTGCTGCTGTTTCTCACCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988-1-2,1-1,1-0-3/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=27.1),PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=30.1)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGACTTGGTGACCTCAGA
R:
GATCAGCCAGCGTGTGAATCA
Band lengths:
141-197
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types