BtaALTA0033207-4/4 @ bosTau6
Alternative 3'ss
Gene
ENSBTAG00000004184 | WDSUB1
Description
WD repeat, sterile alpha motif and U-box domain containing 1 [Source:HGNC Symbol;Acc:HGNC:26697]
Coordinates
chr2:37167345-37169882:+
Coord C1 exon
chr2:37167345-37167410
Coord A exon
chr2:37169435-37169707
Coord C2 exon
chr2:37169708-37169882
Length
273 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
TGTATTTATTTGATTCCTAGGAT
3' ss Score
7.15
Exon sequences
Seq C1 exon
GGCGTTTTGGGTCTTCGACGTGAAAGGACCAGTGCCCAAGGGCCAGTTTAGCAGCAGCGGTGGCAG
Seq A exon
GATGAAGTAACGTTTATCTAAAAACTGCAGGATATTTTCCAGTAAAGAACATGGTGGAACTAATTCACACATTAGCAGATCATAATGATGATGTCAACTGCTGTGCCTTCTCCTCTTCCCTCTTGGCTACTTGTGCCTTGGACAAAACAATTCGCCTATATTTCCTGAGTGACTTTACCGAAGTACCATACTCTCCATTGAAGTTTCACACCTATGCTGTCCACTGCTGCTGTTTCTCCCCTTCAGGACATATTTTGGCTTCATGTTCAACAG
Seq C2 exon
ATGGTACCACTGTCCTATGGGATACTCAAAACGGGCAGATTTTGGCAGTGATGGAACAGCCCAGTGGTAGCCCTGTGAGAGTTTGCCGATTTTCCCCAGACTCCACTTGTTTGGTGTCAGGGGCATCTGATGGAACTGTTGTTTTGTGGAATGCACAGTCATACAAGTTACATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004184-2-4,2-3,2-2,2-1-4/4
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=27.1),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTTGGGTCTTCGACGTGA
R:
TGTAACTTGTATGACTGTGCATTCCA
Band lengths:
236-509
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development