MmuALTA0020122-2/3 @ mm9
Alternative 3'ss
Gene
ENSMUSG00000026988 | Wdsub1
Description
WD repeat, SAM and U-box domain containing 1 [Source:MGI Symbol;Acc:MGI:1919387]
Coordinates
chr2:59716389-59720641:-
Coord C1 exon
chr2:59720458-59720641
Coord A exon
chr2:59716589-59716607
Coord C2 exon
chr2:59716389-59716588
Length
19 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
ACTGGTTTAAAAACTCACAGGCT
3' ss Score
4.11
Exon sequences
Seq C1 exon
TGAGTCGGGCTCTGCCTAGTGAGCAGCCCAGCCCAGCAGCCCAGCTCGGGGCCCAGCCCGGGGCCGAGCCCGGGGCAGTGCAGACTTGGTGACCTCAGAACCCGGAGGTGCGTGACCTCGACCCCGGAGCCGCGCAGGGGAGGAGCCGCCCGGAGGCGGGACTCTCAGTCCGGGTGCGAGGGAA
Seq A exon
GCTGTTTACTTTGTGTGAG
Seq C2 exon
GAACATGGTGAGGCTGATTCACACGCTGGCTGATCACGGTGATGACGTCAGCTGCTGCGCCTTCTCGGCTGCCCTCCTGGCCACCTGCTCCTTGGACAAGACCATCCGCCTGTACTCCCTAAGTGACTTTGCTGAACTGCCGTACTCCCCGCTGAAGTTCCACACCTATGCTGTCCACTGCTGCTGTTTCTCACCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026988-1-2,1-1,1-0-2/3
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=27.1),PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=30.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACCTCGACCCCGGAG
R:
GATCAGCCAGCGTGTGAATCA
Band lengths:
108-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: