GgaALTA0006605-5/5 @ galGal3
Alternative 3'ss
Gene
ENSGALG00000012574 | WSDU1_CHICK
Description
NA
Coordinates
chr7:38182834-38184393:-
Coord C1 exon
chr7:38184277-38184393
Coord A exon
chr7:38183009-38183264
Coord C2 exon
chr7:38182834-38183008
Length
256 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATT
5' ss Score
8.55
3' ss Seq
CTGTTTTAACTTTTCTTCAGGTT
3' ss Score
10.57
Exon sequences
Seq C1 exon
AATTTGGAGATTGCTAAGGAAATAACTTGCCCTGTTCTCCATCTGACCGTGTCTGACAGTTTGGCACCTAACCAGATCGTTCCAGGAAGATAAAGTAGCTGACCTGTGGTGGTGCAG
Seq A exon
GTTTTTTTTCTTTTTTTTTTGGAAGTAGATGGAATGGCGACATTAATTCACACTTTAACAGATCACAGTGATGATGTCAACTGCTGTGCCTTCTCATCATCGTGCTTGGCTACTTGTTCCTTGGACAAAACAATTCGTATTTACTCTTTAAATGACTTCACTGAGCTCCCATACTCACCTTTGAAAGGTCATACATATGCTGTCCACTGCTGCTGCTTCTCTCCATCAGGACACACTTTAGCTTCGTGTTCAACAG
Seq C2 exon
ACGGTGCTACCATCATTTGGGACACTAGCGATGGTCGGATGCTGGCAGTGCTGGAGCAGCCCACTGGCAGTCCTGTCAGAGTCTGCCGCTTTTCTCCCGAGTCCACTTACCTGGTGTCAGGTGCAGCTGATGGAAGTGTCGTTCTTTGGAACGTGCACTCAATGAAATTCTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574-3-8,3-7,3-6,3-5,3-4-5/5
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATTGCTAAGGAAATAACTTGC
R:
AGAATTTCATTGAGTGCACGTTCC
Band lengths:
284-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]