GgaEX0019001 @ galGal3
Exon Skipping
Gene
ENSGALG00000012574 | WSDU1_CHICK
Description
NA
Coordinates
chr7:38177653-38183236:-
Coord C1 exon
chr7:38182834-38183236
Coord A exon
chr7:38179623-38179807
Coord C2 exon
chr7:38177653-38177745
Length
185 bp
Sequences
Splice sites
3' ss Seq
CATATACTCTTACTTTTCAGATC
3' ss Score
10.37
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATGGAATGGCGACATTAATTCACACTTTAACAGATCACAGTGATGATGTCAACTGCTGTGCCTTCTCATCATCGTGCTTGGCTACTTGTTCCTTGGACAAAACAATTCGTATTTACTCTTTAAATGACTTCACTGAGCTCCCATACTCACCTTTGAAAGGTCATACATATGCTGTCCACTGCTGCTGCTTCTCTCCATCAGGACACACTTTAGCTTCGTGTTCAACAGACGGTGCTACCATCATTTGGGACACTAGCGATGGTCGGATGCTGGCAGTGCTGGAGCAGCCCACTGGCAGTCCTGTCAGAGTCTGCCGCTTTTCTCCCGAGTCCACTTACCTGGTGTCAGGTGCAGCTGATGGAAGTGTCGTTCTTTGGAACGTGCACTCAATGAAATTCTACAG
Seq A exon
ATCTGGGAATGTTAAAGATGGTTCTTTGGTGGCCTGTGCGTTTTCTCCAGGTGGAAATTTCTTTGTTACTGGATCATCATGTGGTGATCTGACTGTTTGGGATGATAAAATGAGATGTCTCTGTAATGAAAAAGCACATGATCTTGGCGTTACCTGCTGTGATATTTCTTCACATCCAGTTTCTG
Seq C2 exon
ATGGGGAACATGCATCCGGATGCTTCCAGATGGCATCTTGTGGTCAAGATAATAAGATCAAAGTCTGGTTTATTTTGTTTGCAGACTTCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012574-'5-10,'5-9,6-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0040027=WD40=WD(100=27.8),PF0040027=WD40=WD(100=28.6),PF0040027=WD40=WD(100=23.3)
A:
PF0040027=WD40=WD(100=46.0),PF0040027=WD40=PU(52.1=39.7)
C2:
PF0040027=WD40=PD(45.8=68.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTGCTTCTCTCCATCAG
R:
ATCCGGATGCATGTTCCCCAT
Band lengths:
244-429
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]