MmuINT0036593 @ mm9
Intron Retention
Gene
ENSMUSG00000039205 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:1920234]
Coordinates
chr2:32232813-32233150:+
Coord C1 exon
chr2:32232813-32232882
Coord A exon
chr2:32232883-32233028
Coord C2 exon
chr2:32233029-32233150
Length
146 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
CTGCTGTCGTCTGTCCCCAGGTG
3' ss Score
12.43
Exon sequences
Seq C1 exon
GTGAAGCCGAGAGAAACATCCTCAGAGCAAGGGAAGGGCTCTGAGACGTACAACCCCAACACAGCCTATG
Seq A exon
GTAAGACCCCAGGCTAAGCCCCCAGTCTCAGCCACAGCATCCCAGACAGGCACCCCGACCTCTGTTCCCACCCAGAGCCGGTGTGATGCCCAGCCGGTGAGGGGGTGGGCCTTAGGTGTGCAGACCCTGCTGTCGTCTGTCCCCAG
Seq C2 exon
GTGAGGATTTCCTGGTGCCAGTGATGGGCTATGTCTGTCAAATCTGTCACAAGTTCTACGACAGCAACTCAGAATTGCGGCTTTCTCACTGCAAGTCCCTGGCCCACTTTGAGAACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039205-Ciz1:NM_028412:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.953 A=NA C2=0.001
Domain overlap (PFAM):
C1:
PF052857=SDA1=FE(14.1=100)
A:
NA
C2:
PF052857=SDA1=FE(24.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAAGCCGAGAGAAACATCCT
R:
CAGGTTCTCAAAGTGGGCCAG
Band lengths:
189-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: