HsaINT0035579 @ hg19
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:16744]
Coordinates
chr9:130929038-130929443:-
Coord C1 exon
chr9:130929374-130929443
Coord A exon
chr9:130929160-130929373
Coord C2 exon
chr9:130929038-130929159
Length
214 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
CCTGCCATCCCATCCTACAGGTG
3' ss Score
10.14
Exon sequences
Seq C1 exon
GTGAGGTCCAGAGATATATCCAGAGAGGAGTGGAAGGGCTCGGAGACCTACAGCCCCAATACTGCATATG
Seq A exon
GTAAGGCCCCAGCTCTGAGCCCACCTGCAGGAGCTTCAGCCCTTGGGCCCAGCCTCCACATGACCCTCCCATATCCCAGCCATGGCATTCTGGCTGGGAAGCCTTCTCTTCTGCCCCTGCCTAGAGGGTTGGGGAGCACATGGGCCCCTAGAGAGGGAGGGACACCTCGCTGGTACAGGGATGTGAGTGCAGACCCTGCCATCCCATCCTACAG
Seq C2 exon
GTGTGGACTTCCTGGTGCCCGTGATGGGCTATATCTGCCGCATCTGCCACAAGTTCTATCACAGCAACTCAGGGGCACAGCTCTCCCACTGCAAGTCCCTGGGCCACTTTGAGAACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337-CIZ1:NM_001131015:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.022
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGTCCAGAGATATATCCAGAGA
R:
CAGGTTCTCAAAGTGGCCCAG
Band lengths:
189-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)