BtaINT0038723 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012274 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr11:98806868-98807258:-
Coord C1 exon
chr11:98807189-98807258
Coord A exon
chr11:98806990-98807188
Coord C2 exon
chr11:98806868-98806989
Length
199 bp
Sequences
Splice sites
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
3' ss Seq
TAGACCCTGCTGTCCTTCAGGGG
3' ss Score
6.31
Exon sequences
Seq C1 exon
ATGAGATCCAGAGACATATCCATAGAGGAGTGGAAAGGCTCAGAGACCTACAGCCCCAACACCGCATACG
Seq A exon
GTAAGACCCCAGCCCTGATGCCACCTGCAGGAGCGGCGGGCCTCGGGTCCCAGTCACAGCGTCCTGGCCAGGTAGCCTGGCCCCTCGTCCTGGTCTCTTTGCCCACCTGGAGGGTATTAGGGGAGGCTAGGCCCCTAGGTTGGGGGGAGGCACCAGTCTGGCGTGGGGATGTGAGCGCTTAGACCCTGCTGTCCTTCAG
Seq C2 exon
GGGTGGACTTCCTGGTGCCCGTGATGGGCTATGTCTGCCGCGTCTGCCACAAGTTCTACCACAGCAACTCGGGGGCGCAGCTCTCCCACTGCAAGTCCTTGGCCCACTTTGAGAACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012274:ENSBTAT00000016302:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCCAGAGACATATCCATAGAGG
R:
CAGGTTCTCAAAGTGGGCCAA
Band lengths:
186-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development