HsaINT0035579 @ hg38
Intron Retention
Gene
ENSG00000148337 | CIZ1
Description
CDKN1A interacting zinc finger protein 1 [Source:HGNC Symbol;Acc:HGNC:16744]
Coordinates
chr9:128166759-128167164:-
Coord C1 exon
chr9:128167095-128167164
Coord A exon
chr9:128166881-128167094
Coord C2 exon
chr9:128166759-128166880
Length
214 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGG
5' ss Score
9.33
3' ss Seq
CCTGCCATCCCATCCTACAGGTG
3' ss Score
10.14
Exon sequences
Seq C1 exon
GTGAGGTCCAGAGATATATCCAGAGAGGAGTGGAAGGGCTCGGAGACCTACAGCCCCAATACTGCATATG
Seq A exon
GTAAGGCCCCAGCTCTGAGCCCACCTGCAGGAGCTTCAGCCCTTGGGCCCAGCCTCCACATGACCCTCCCATATCCCAGCCATGGCATTCTGGCTGGGAAGCCTTCTCTTCTGCCCCTGCCTAGAGGGTTGGGGAGCACATGGGCCCCTAGAGAGGGAGGGACACCTCGCTGGTACAGGGATGTGAGTGCAGACCCTGCCATCCCATCCTACAG
Seq C2 exon
GTGTGGACTTCCTGGTGCCCGTGATGGGCTATATCTGCCGCATCTGCCACAAGTTCTATCACAGCAACTCAGGGGCACAGCTCTCCCACTGCAAGTCCCTGGGCCACTTTGAGAACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148337:ENST00000357558:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGAGGTCCAGAGATATATCCAGAGA
R:
CAGGTTCTCAAAGTGGCCCAG
Band lengths:
189-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development