RnoINT0036646 @ rn6
Intron Retention
Gene
ENSRNOG00000013442 | Ciz1
Description
CDKN1A interacting zinc finger protein 1 [Source:RGD Symbol;Acc:1305336]
Coordinates
chr3:11406262-11406573:+
Coord C1 exon
chr3:11406262-11406331
Coord A exon
chr3:11406332-11406451
Coord C2 exon
chr3:11406452-11406573
Length
120 bp
Sequences
Splice sites
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
3' ss Seq
ACCCTGCTGTCTGTCCCCAGGTG
3' ss Score
14.25
Exon sequences
Seq C1 exon
CTGCAGTCAAGAGAAACATCTTCAGAGCAATGGAAGGACTCTGAGACTTACAGCCCCAACACGGCCTATG
Seq A exon
GTAAGACCCCAGGCTAAGCCGCCAGTCTCAGCCACAGCACTGCAGTCAGGCACTCAGAAGAGGTGTGATGCCCAGCTGGTGACAGGGATTTAGTATGCAGACCCTGCTGTCTGTCCCCAG
Seq C2 exon
GTGTGGACTTCCTGGTGCCAGTGATGGGCTATGTCTGCCGAATCTGTCACAAGTTCTACGACAGTAACTCAGAATTTCGGCTCTCTCACTGCAAGTCTCTGGCCCACTTTGAGAACCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013442:ENSRNOT00000037399:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTCAAGAGAAACATCTTCAGA
R:
GGTTCTCAAAGTGGGCCAGAG
Band lengths:
186-306
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]