MmuALTD0014441-2/2 @ mm9
Alternative 5'ss
Gene
ENSMUSG00000026939 | Tmem141
Description
transmembrane protein 141 [Source:MGI Symbol;Acc:MGI:1098773]
Coordinates
chr2:25476586-25476978:-
Coord C1 exon
chr2:25476895-25476978
Coord A exon
chr2:25476881-25476894
Coord C2 exon
chr2:25476586-25476693
Length
14 bp
Sequences
Splice sites
5' ss Seq
ACGGTGGGT
5' ss Score
8.27
3' ss Seq
TCCTGCTTCCTGTTCTCCAGTTG
3' ss Score
8.19
Exon sequences
Seq C1 exon
GCACTGGTGCGACTTTTGGCCTGCTGATGTTCATTAAGAGGAAGTTTCCATACCCTGTGCAGTGGAGCTTCCTAGTGTCTGCCA
Seq A exon
GTGAGTACTCCACG
Seq C2 exon
TTGCAGGATCTGTGGCCAGCTACAGAGTGACAAGTATGGAGTGTCAGAAATGCAGCAATCTCTGGCTCTTCCTGGAGACCGGGCAGCTCCCCAAAGACATAAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026939-3-7,4-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.075
Domain overlap (PFAM):
C1:
PF151101=TMEM141=FE(29.8=100)
A:
NA
C2:
PF151101=TMEM141=PD(28.7=77.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTGGAGCTTCCTAGTGT
R:
CCAGGAAGAGCCAGAGATTGC
Band lengths:
102-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: