MmuEX0039156 @ mm9
Exon Skipping
Gene
ENSMUSG00000036249 | Rbm43
Description
RNA binding motif protein 43 [Source:MGI Symbol;Acc:MGI:1918934]
Coordinates
chr2:51785180-51790527:-
Coord C1 exon
chr2:51790352-51790527
Coord A exon
chr2:51787920-51788043
Coord C2 exon
chr2:51785180-51785369
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTAAAAATGACCTCATTAGATA
3' ss Score
0.77
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGAAAGCGAAAGCGGAACCCGTTCACCTCCAGTTTAGCGCTCCCGCTGCTCGAACATCTCCGAGGCCTGGCAAGTCGCTTTTCCCCGGGTTGCAGTGCAGGAAGGCGCGCCGAGGGTCCCGGAGCACGTGTCCTGCGCGGTCGCGCGCCCCGAAGTGGCCGTCACGGGCGCAGCAG
Seq A exon
ATAGGATCTGTGTGCCATCTCATCGTCTTGACTCAGCAACCGGGTGAAAGGCAGAGATTCTGAGACCGTGCATCTTCTGGACCATCACCACCACTGGCTTAGTCATTTTCTGAATCCCGCTATG
Seq C2 exon
GCATCAGCGTGGAAGGTCAAAGATCCTACAGTTGCTGAGAGAACAGTTGTAGTCTCTGGACTTCCAGTTGGCCTTTTAAAGGACCAGTTAGTGAAGTGCTACTTCCAAGACGAGGGTGGACATGTGGAAGAGGTGATATATCCATCAAAATCCAAAGGAGTTGCGTATATCATCTTCAAGGAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036249-'2-5,'2-3,5-5
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0007617=RRM_1=PU(76.2=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCGAACATCTCCGAG
R:
CACATGTCCACCCTCGTCTTG
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types