GgaEX1048619 @ galGal4
Exon Skipping
Gene
ENSGALG00000012479 | RBM43
Description
RNA binding motif protein 43 [Source:HGNC Symbol;Acc:HGNC:24790]
Coordinates
chr7:34601494-34603163:-
Coord C1 exon
chr7:34603070-34603163
Coord A exon
chr7:34602110-34602817
Coord C2 exon
chr7:34601494-34601692
Length
708 bp
Sequences
Splice sites
3' ss Seq
CTGCCTCCTCTTCCCCTCAGGAG
3' ss Score
11.06
5' ss Seq
CAAGTAAGG
5' ss Score
7.66
Exon sequences
Seq C1 exon
CCGGGCCCAACGATCGGCAGCCGAGACGCAGGCGGTGCTCCAGGGGCTGCTCCCCCGCCCCTCACCCCCCGGGCCGCCGCGCAGCGACGCCATG
Seq A exon
GAGAGCTGCGGCGCCGCTCTGTGTGGATCCGGGCAGAACGCGCGCGTCCTGCGGGCTCAGTGAGCGCCCGGTGACCCCAGAGCTTCACACAGCACGGGGCCAGGAGAGCCCTCGTCAGAGAAGCATGGAGGATGTGAGCCCAGGAGAGAAGCCTGAAGAAGGCAGACTGAACGACAGTCCTTGCGTGGTCGCTCCAGAGCTAGCGACAGCTCGTTGCCATAAACACTTCCCATGCAAACAGGATCACAGAATGGCTTGGGTTGGAAGGCACCCCAAGGATCATCAGGTCCCAGCCCCCTGCCACAGGCAGGGTTGCCAACTGCTAGATCAACAAACGTGCTGAATTGTTTCCTTCCCTTCATTCCAAGCCAACAAACCATTGCAAAATCTCCTCAGAGTCCCATCGTTTATGGTGTTTTTCCATATTTTCACTGAGATAATACTGTTTATTTTTGTGTAGCAGGAATGGAAAGAAAAGATGCTTTCCCTAACAAGGCATAGATGCAAATCCTGTTTAGGATGGGTTTCATGTTTGCAGCAATGGGAGGTCTGGCTCTGATGAAAATCATGTGTGTAGTTACTTTATGCACTGCAGGTCTCAGATGGCCGGGATTATGTTCCTCCGATTTAACAAGGTTGTCCTCTGAGTGAATGGGGAGAGCTGAGTCAGAGCACAACCCTCGGTCCCAGCTCTTGTGAATTTAACAA
Seq C2 exon
GACATGGGACAGGCTGCTAAATCAGCAAGGACCGTTGTCATCTCTGGTGTTCCAGATGGAGTTCTGAACAATGATGTCATGAGCGACATTCTGGTGATTCATTTCCAAAAGGCAAAGAATAACGGTGGAGATGTGGAAGAAGTGAAGTATCCAACAACGGAAAAAGGAGTTGCATATATAACTTTTGAAGATCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012479_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.104
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF072928=NID=WD(100=65.7),PF142591=RRM_6=PU(75.3=82.1),PF072928=NID=PU(11.5=13.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCCAGGGGCTGCTC
R:
TATATGCAACTCCTTTTTCCGTTGT
Band lengths:
238-946
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]