RnoEX6016745 @ rn6
Exon Skipping
Gene
ENSRNOG00000004673 | Rbm43
Description
RNA binding motif protein 43 [Source:RGD Symbol;Acc:1306676]
Coordinates
chr3:37440475-37445907:-
Coord C1 exon
chr3:37445871-37445907
Coord A exon
chr3:37442670-37442788
Coord C2 exon
chr3:37440475-37440664
Length
119 bp
Sequences
Splice sites
3' ss Seq
TAAAAGCACAATTTCCTTAGGTA
3' ss Score
3.03
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGCCTTCCCGCTGCCTGAGCATCTCCTCCCTGCCCAG
Seq A exon
GTAGGACCTGCGTGCCATCTCATCTTGACTCAGCTACTGGTTGAAAGGACAGCGATTCCGAGACCCTGCATCTTCTGGGCCATCACCACCACCGCCTTAGTTTTCTGAATTCCACGATG
Seq C2 exon
GCATCAGCGTTGACGGTCAAAGATCCCACAGTTTCTGAGAGAACAGTTGTAGTTTCTGGGCTTCCAGTCGGCCTCTCAAAAGACCAGTTAGTGAAGCGCTACTTCCGGGATGAGGGCGGACATGTGGAAAAGGTGATATATCCACCAAGATCCAAAGGAGTTGCGTATATCATCTTCAAGGAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004673-'1-2,'1-0,6-2=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0007617=RRM_1=PU(71.6=75.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTGAGCATCTCCTCCC
R:
TTTCCTTGAAGATGATATACGCAACT
Band lengths:
210-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]