MmuEX0039156 @ mm10
Exon Skipping
Gene
ENSMUSG00000036249 | Rbm43
Description
RNA binding motif protein 43 [Source:MGI Symbol;Acc:MGI:1918934]
Coordinates
chr2:51929660-51935007:-
Coord C1 exon
chr2:51934832-51935007
Coord A exon
chr2:51932400-51932523
Coord C2 exon
chr2:51929660-51929849
Length
124 bp
Sequences
Splice sites
3' ss Seq
CTTAAAAATGACCTCATTAGATA
3' ss Score
0.77
5' ss Seq
ATGGTAAGT
5' ss Score
11.01
Exon sequences
Seq C1 exon
GGAAAGCGAAAGCGGAACCCGTTCACCTCCAGTTTAGCGCTCCCGCTGCTCGAACATCTCCGAGGCCTGGCAAGTCGCTTTTCCCCGGGTTGCAGTGCAGGAAGGCGCGCCGAGGGTCCCGGAGCACGTGTCCTGCGCGGTCGCGCGCCCCGAAGTGGCCGTCACGGGCGCAGCAG
Seq A exon
ATAGGATCTGTGTGCCATCTCATCGTCTTGACTCAGCAACCGGGTGAAAGGCAGAGATTCTGAGACCGTGCATCTTCTGGACCATCACCACCACTGGCTTAGTCATTTTCTGAATCCCGCTATG
Seq C2 exon
GCATCAGCGTGGAAGGTCAAAGATCCTACAGTTGCTGAGAGAACAGTTGTAGTCTCTGGACTTCCAGTTGGCCTTTTAAAGGACCAGTTAGTGAAGTGCTACTTCCAAGACGAGGGTGGACATGTGGAAGAGGTGATATATCCATCAAAATCCAAAGGAGTTGCGTATATCATCTTCAAGGAAAAGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036249_CASSETTE1
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
Show structural model
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0007617=RRM_1=PU(76.2=75.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGCTCGAACATCTCCGAG
R:
CACATGTCCACCCTCGTCTTG
Band lengths:
258-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types