Special

MmuEX0037403 @ mm9

Exon Skipping

Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32082465-32090056:+
Coord C1 exon
chr2:32082465-32082556
Coord A exon
chr2:32084783-32084864
Coord C2 exon
chr2:32086131-32090056
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTTTGGTTTTTTCAGGCC
3' ss Score
10.39
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
TCCGCTCCGATGGAGTTGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTTCCTACTGGAGGGTCCGCACCATCCCCGCAGGCATACAG
Seq A exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTTCAACAG
Seq C2 exon
GCAAAGCGAGTGGATGAAAAACCCGGCCTGGGAACCGTGAAGCTGCAGGAGGCCTCATCAGCCACCTCCCAGATGAAGCGAACCGGAGCAATCAAGCCTCGGGCAGTCAAGGTGGAGGGAAGCAAAGCCTGAAGGTGCCTGGGTCTCTTGCCTCACCTAACAGGGACGGTGCGCCCCACACCCTAACAGGGATGGTGTGCCACACCAGCCTGGACAGCCACCGCCTGGCTTGGACAGAGCTCTCTTCCATTCACGAAAGCTCCTGAGAGTTCCATCGTCAGCCAGCCTGCATCGTGGACATGTGGCTTTGACCTGCTTGCTTTGGTACAAAAGAGCAGACTTCCTCCTTCCCACCCCTCTGCCCAGTGACTGTGGAGTGAGCCTCCTGTGCAGTGCAGACCTGCCCGCCCGCCCGCCCGCCCAGTTCCCTAGGCACAGTGGTTTGGCAGCAGGGTCATTTTAGCTGGAGGCTTTTTGTTTTAAAAAGCAGCTAAGGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
Alternative protein isoforms (No Ref, Alt. Stop)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=1.000 A=1.000 C2=1.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NO

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000064892f6238A





     
                   









    
Main Skipping Isoform:
ENSMUSP00000035734





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000064892, ENSMUSP00000114656, ENSMUSP00000116429
          









    
Other Skipping Isoforms:
NA
  



Associated events







Other assemblies


mm10




Conservation


Human
(hg38)
chr9:131494405-131494486 
ALTERNATIVE
HsaEX0007675
(PRRC2B)
Human
(hg19)
chr9:134369792-134369873 
ALTERNATIVE
HsaEX0007675
(BAT2L)
Rat
(rn6)
chr3:11247131-11247212 
ALTERNATIVE
RnoEX6016411
(Prrc2b)
Cow
(bosTau6)
chr11:101643021-101643102 
ALTERNATIVE
BtaEX0028675
(PRRC2B)
Chicken
(galGal4)
chr17:6215659-6215740 
ALTERNATIVE
GgaEX0005028
(PRRC2B)
Chicken
(galGal3)
chr17:6842602-6842683 
ALTERNATIVE
GgaEX0005028
(PRRC2B)
Zebrafish
(danRer10)
chr5:71239785-71239863 
HIGH PSI
DreEX0007124
(PRRC2B)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
ATGTTCCTACTGGAGGGTCCG

				
R: 
CTTCAGGCTTTGCTTCCCTCC

				
Band lengths: 
177-259

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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