BtaEX0028675 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101640283-101644848:+
Coord C1 exon
chr11:101640283-101640374
Coord A exon
chr11:101643021-101643102
Coord C2 exon
chr11:101644320-101644848
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCCTCCTTTGGTTTTTTCAGGCC
3' ss Score
10.48
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
TCCTCTCAGATGGAGATGAAGGGCTTCCACTTTGCCGACAGTAAACAGAATGTTCCTTCAGGAGGCTCCGTGCCGTCACCACAGGCCTACAG
Seq A exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTTCAACAG
Seq C2 exon
GCAAAGCAGCGAGTGGATGAAAAGCCCGGCCTGGGAGCCATGAAGCTGCAGGAGCCACCCTCAGCCGCTTCCCCGCTGAAGCGAACTGGAGCAATCAAGCCCCGGGCGGTCAAGGTGGAGGAGAGCAAGGCCTGAGGGGCTGGGCCCGGCCTGCCCGGGAGGACTCTGCCCTTGGCCTCGCCACCGCCTGATGCTGGGGAGTCTCACCGAGGGATCCCCTGTCCACCTGCCTGGCCCGGACTTCGAGATCTCCCTTCTCTCCTCCACTCCCGAAAGCTCCGTTGTCCAACCGGCTTGTACCCGTGGATCTCTGGCATTGACCTGCTTGCTTTAATACGAAACGAACAAGCAAATGACTCCATTCCCATCTCCTTTCCATCACGACCGCGGAGTGACCGAGCGTGGAGTGACCGAGCGTCATGCCATGCAGACTAACCCCGCCCTCCCCCGCTTCTTCCCCTCCCCGCCTCCCGTCCCCGGGCACCGTGGTCTGGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCACTTTGCCGACAGTA
R:
GCTTGATTGCTCCAGTTCGCT
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development