HsaEX0007675 @ hg19
Exon Skipping
Gene
ENSG00000130723 | BAT2L
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:28121]
Coordinates
chr9:134367556-134375558:+
Coord C1 exon
chr9:134367556-134367647
Coord A exon
chr9:134369792-134369873
Coord C2 exon
chr9:134371127-134375558
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTTTGGTTTTTTCAGGCC
3' ss Score
10.39
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
CCCTCTCAGATGGAGATGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTCCCTTCAGGAGGCCCCGTGCCATCGCCACAGACCTACAG
Seq A exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTGCAACAG
Seq C2 exon
GCAAAACAACGAGTGGATGAGAAACCCAGCCTGGGAGCCGTGAAGCTGCAGGAGGCCCCCTCGGCTGCCTCCCAGATGAAGCGAACCGGAGCGATCAAGCCTCGGGCTGTCAAAGTGGAGGAGAGTAAGGCCTGACAGTGCCTGGCTGCCACCTCGCCTCTCCCTACTGAGGACGGTGCCGCCATGCGGCCTCGACACAGCCGACACTCGGGAGCCTCACCAGATCCACCGTCCAAATGCGTGGCCCAGACTGAGAGACCTCCCTCCTCTCCACTCCCGAAAGCTCCGTTGTCAACCAGCTTGCACCCGTGGATATATGGCATTGACCCGCTTGCTTTGATACGAAACAAAAAAGCAGACGACTCCTTCATCCCATCTGCTCCTACCGTGACTGTGGAGTGACGCCTCCTGTGCAGTGCAGATTTGCCCTCCCTGCCTCCTCCCTGTCCTGCCGCGCAGCCAGGGCGCCTTCTCAGCAGTGCTTCCGGCCCAGCCGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCACTTTGCCGACAGTA
R:
GGCTTGATCGCTCCGGTTC
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)