GgaEX0005028 @ galGal4
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6214965-6217198:+
Coord C1 exon
chr17:6214965-6215056
Coord A exon
chr17:6215659-6215740
Coord C2 exon
chr17:6216125-6217198
Length
82 bp
Sequences
Splice sites
3' ss Seq
GTCGACTCTTCGATTTCCAGGCC
3' ss Score
6.82
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
Exon sequences
Seq C1 exon
TCCTCCCAAATGGAAATGAAAGGCTTTCATTTTTCTGATGGTAAACAGAATATGTCCTCTGGAGGGTCTGTACCGTCACCACACGCATACAG
Seq A exon
GCCTAGCTCTGCCAGCCCAAATGGGAAGCCATCTGGACCAGCAGTTAGTATGGGCTCTGTGCAAGGACACTATGTGCAACAG
Seq C2 exon
GCAAAACAACGGGTGGATGAAAATAAAGCCAATCTGGGAGCAGTAAAGCTGCAAGAAACAGCCTCCACAAGCCAGATGAAACCAGTGCGCACAGGAGCGATCAAACCTCAGGCAGTAAAAGTGGAGGAAAGCAAGGCCTAGGAGCACAGCTGATGCCAGCTGGTCCTGCTGGCTGATAGGTCCTACAGCTCAGACTGAACCCCACTGGATCTCCTGAAAATCTCACCAGACCTACGCCTGCCCCACACTGACTGGCTACAGTGACATCATCCAAGTCCCTCTCCTAGCAAAGCAGTTTGAAACGGTGGATATGACATTGACCTGCTTGCTTTGAAACAAACCAACCATGTGACTTTTAAGTGGCTTAAGCCTTTTTTTTCTCCACCCCATGCCCCATCCACAGGTAGCTGTGATAGCTCACTTGGCAAAGCCCATCCTTCTCCTTCCCTACTTCTGTCTCAGCAGAGTGGCAACTGAAGGAGAGGGGGTTACTTTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.838 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACCGTCACCACACGCATAC
R:
GTGCTCCTAGGCCTTGCTTTC
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]