GgaEX0005027 @ galGal4
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6214157-6217198:+
Coord C1 exon
chr17:6214157-6214333
Coord A exon
chr17:6214965-6215056
Coord C2 exon
chr17:6216125-6217198
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGCACGTTTTCCTATGTAGTCC
3' ss Score
7.24
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
Exon sequences
Seq C1 exon
CTAACAATGCCTGTGCCTGGCTCCCAGCTTCCGCTGCCTCGCTATGGCTCTGGCCAGCAGCCCCTGATTCTGCCACAGTCCATCCAGCTTCCTCAAGGGCAAAACCTGTCTGTAGGAGCTCCCCGAAGAATTCTTCCTCCTGGGTCACAGCCTTCAGTTCTTGCTGCCAGCAGGGAG
Seq A exon
TCCTCCCAAATGGAAATGAAAGGCTTTCATTTTTCTGATGGTAAACAGAATATGTCCTCTGGAGGGTCTGTACCGTCACCACACGCATACAG
Seq C2 exon
GCAAAACAACGGGTGGATGAAAATAAAGCCAATCTGGGAGCAGTAAAGCTGCAAGAAACAGCCTCCACAAGCCAGATGAAACCAGTGCGCACAGGAGCGATCAAACCTCAGGCAGTAAAAGTGGAGGAAAGCAAGGCCTAGGAGCACAGCTGATGCCAGCTGGTCCTGCTGGCTGATAGGTCCTACAGCTCAGACTGAACCCCACTGGATCTCCTGAAAATCTCACCAGACCTACGCCTGCCCCACACTGACTGGCTACAGTGACATCATCCAAGTCCCTCTCCTAGCAAAGCAGTTTGAAACGGTGGATATGACATTGACCTGCTTGCTTTGAAACAAACCAACCATGTGACTTTTAAGTGGCTTAAGCCTTTTTTTTCTCCACCCCATGCCCCATCCACAGGTAGCTGTGATAGCTCACTTGGCAAAGCCCATCCTTCTCCTTCCCTACTTCTGTCTCAGCAGAGTGGCAACTGAAGGAGAGGGGGTTACTTTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776_MULTIEX1-3/4=1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.873 A=0.838 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTTCCTCAAGGGCAAAA
R:
GGCTTGTGGAGGCTGTTTCTT
Band lengths:
167-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]