HsaEX6063586 @ hg38
Exon Skipping
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131491425-131494486:+
Coord C1 exon
chr9:131491425-131491580
Coord A exon
chr9:131492169-131492260
Coord C2 exon
chr9:131494405-131494486
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTCCTGCTTGGTCTCTCTAGCCC
3' ss Score
7.63
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CTGACCATGCCACTGCCTCGGTACGGCTCCGGGCAGCAGCCACTGATCCTGCCCCAGTCTATTCAGCTGCCACCTGGGCAGAGCCTCTCCGTTGGGGCCCCCCGAAGGATTCCTCCGCCCGGGTCCCAGCCGCCAGTCCTGAACACCAGCAGAGAG
Seq A exon
CCCTCTCAGATGGAGATGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTCCCTTCAGGAGGCCCCGTGCCATCGCCACAGACCTACAG
Seq C2 exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723-'71-88,'71-86,72-88
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.983 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGATCCTGCCCCAGTCTA
R:
CCTGCACAGAGCCCATGTTAA
Band lengths:
181-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains