BtaEX6046884 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101639654-101643102:+
Coord C1 exon
chr11:101639654-101639830
Coord A exon
chr11:101640283-101640374
Coord C2 exon
chr11:101643021-101643102
Length
92 bp
Sequences
Splice sites
3' ss Seq
TCCCTTCCCGGTATCTCTAGTCC
3' ss Score
7.43
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CTGACGATGCCCCTGCCTGGCTCCCAGCTGCCTCTGCCCCGGTACGGCTCCGGGCAGCAGCCCCTGCTCCTGCCACAGTCCATCCAGCTGCCCCAGGCGCAGAGCCTGTCAGTCGGGGCCCCCCGCAGGATCCTTGCCCCCGGGTCCCAGCCTTCGGTCCTCAACACCAGCAGAGAG
Seq A exon
TCCTCTCAGATGGAGATGAAGGGCTTCCACTTTGCCGACAGTAAACAGAATGTTCCTTCAGGAGGCTCCGTGCCGTCACCACAGGCCTACAG
Seq C2 exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400-'44-52,'44-51,45-52=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.949 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTGCCACAGTCCATCCAG
R:
CCTGCACAGAGCCCATGTTAA
Band lengths:
176-268
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]