DreEX0007119 @ danRer10
Exon Skipping
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71239785-71240936:-
Coord C1 exon
chr5:71240772-71240936
Coord A exon
chr5:71240116-71240195
Coord C2 exon
chr5:71239785-71239863
Length
80 bp
Sequences
Splice sites
3' ss Seq
AGTTACTGTTCCTCTGTCAGGTT
3' ss Score
8.11
5' ss Seq
CAGGTGAAC
5' ss Score
5.56
Exon sequences
Seq C1 exon
GTGACGATGCCGATGCCAGGCTCTCAGCTGCGCTATGGTTCAGCCCAGCAGCACCTCATCCTCCCGCAGTCCATCCAGCTCCAGCAGAACCAGAATCTGTCTGTGGGAGCTCCACGCCGCATGATGCCCCCAGGGTCACAGCCAGTGCTAAGCGGCAGCAGAGAG
Seq A exon
GTTTCACAGATGGACATGAAAGGCTTTCAGTTCTCAGATAAACCCAGCCACTCTCCTGGAATACCCAGCGGCTCATACAG
Seq C2 exon
GCCCGGCTCTGCCAGCCCCAGTGGGAAAGCGTCGGGTGCTCCAGCGGTGGCGTCTCTTGCAGGACACTACACACAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639-'37-42,'37-40,38-42
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.855 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCAGCAGAACCAGAAT
R:
GCTGTGTGTAGTGTCCTGCAA
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]