MmuEX6100481 @ mm9
Exon Skipping
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32081751-32084864:+
Coord C1 exon
chr2:32081751-32081906
Coord A exon
chr2:32082465-32082556
Coord C2 exon
chr2:32084783-32084864
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCTTGGCCACTCTAGTCC
3' ss Score
5.13
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
CTCACTATGCCACTGCCTCGGTATGGCTCCGGGCAGCAGCCACTGATCCTGCCACAGTCCATCCAGCTGCCTCCAGGACAGAGTCTCTCTGTTGGAGCCCCCCGGAGGGTTCCTCCACCTGGCTCCCAACCTCCCGTCCTGAACACCAGCAGAGAG
Seq A exon
TCCGCTCCGATGGAGTTGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTTCCTACTGGAGGGTCCGCACCATCCCCGCAGGCATACAG
Seq C2 exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTTCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262-'45-48,'45-47,47-48=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.992 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGATCCTGCCACAGTCCAT
R:
CCTGCACAGAGCCCATGTTAA
Band lengths:
180-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: