MmuEX6100481 @ mm10
Exon Skipping
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32223929-32234537:+
Coord C1 exon
chr2:32223929-32224169
Coord A exon
chr2:32226945-32227036
Coord C2 exon
chr2:32230611-32234537
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTGCTTCTTGGCCACTCTAGTCC
3' ss Score
5.13
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
GTCTCAGGTGTACATGCACCCCAGCCTGTCACCACCCAGCACGATGATCCTCTCAGGGGGTACAGCCTTGAAGCCCCCATACTCTGCATTTCCTGGCATACAGCCCTTGGAGATGGTGAAGCCCCAGTCTGGCTCACCCTACCAGCCCATGAGTGGAAACCAGGCCCTGGTCTACGAGGGCCAGCTTGGCCAGGCTGCCGGGCTGGGCACCTCCCAGATGCTGGATTCCCAGCTCCCACAG
Seq A exon
TCCGCTCCGATGGAGTTGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTTCCTACTGGAGGGTCCGCACCATCCCCGCAGGCATACAG
Seq C2 exon
GCAAAGCGAGTGGATGAAAAACCCGGCCTGGGAACCGTGAAGCTGCAGGAGGCCTCATCAGCCACCTCCCAGATGAAGCGAACCGGAGCAATCAAGCCTCGGGCAGTCAAGGTGGAGGGAAGCAAAGCCTGAAGGTGCCTGGGTCTCTTGCCTCACCTAACAGGGACGGTGCGCCCCACACCCTAACAGGGATGGTGTGCCACACCAGCCTGGACAGCCACCGCCTGGCTTGGACAGAGCTCTCTTCCATTCACGAAAGCTCCTGAGAGTTCCATCGTCAGCCAGCCTGCATCGTGGACATGTGGCTTTGACCTGCTTGCTTTGGTACAAAAGAGCAGACTTCCTCCTTCCCACCCCTCTGCCCAGTGACTGTGGAGTGAGCCTCCTGTGCAGTGCAGACCTGCCCGCCCGCCCGCCCGCCCAGTTCCCTAGGCACAGTGGTTTGGCAGCAGGGTCATTTTAGCTGGAGGCTTTTTGTTTTAAAAAGCAGCTAAGGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262_MULTIEX2-2/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.590 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCATACAGCCCTTGGAGATGG
R:
CGGGTTTTTCATCCACTCGCT
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types