GgaEX0005026 @ galGal4
Exon Skipping
Gene
ENSGALG00000003776 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr17:6214157-6215056:+
Coord C1 exon
chr17:6214157-6214333
Coord A exon
chr17:6214573-6214664
Coord C2 exon
chr17:6214965-6215056
Length
92 bp
Sequences
Splice sites
3' ss Seq
TTTATTACGTGTTTACACAGGTT
3' ss Score
7.58
5' ss Seq
TGAGTAGGT
5' ss Score
3.27
Exon sequences
Seq C1 exon
CTAACAATGCCTGTGCCTGGCTCCCAGCTTCCGCTGCCTCGCTATGGCTCTGGCCAGCAGCCCCTGATTCTGCCACAGTCCATCCAGCTTCCTCAAGGGCAAAACCTGTCTGTAGGAGCTCCCCGAAGAATTCTTCCTCCTGGGTCACAGCCTTCAGTTCTTGCTGCCAGCAGGGAG
Seq A exon
GTTTCCCCAGAGTGCTTGAGGGGTGGTGAACTCCAGACACAGTTGGAATACTGCCCAGATATTTCACACTGTTGTGAAGCTTGTCCATTTGA
Seq C2 exon
TCCTCCCAAATGGAAATGAAAGGCTTTCATTTTTCTGATGGTAAACAGAATATGTCCTCTGGAGGGTCTGTACCGTCACCACACGCATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776_MULTIEX1-2/4=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.873 A=0.032 C2=0.838
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSGALT00000005992fB528
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGCTTCCTCAAGGGCAAAA
R:
GACGGTACAGACCCTCCAGAG
Band lengths:
171-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]