HsaEX0007675 @ hg38
Exon Skipping
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131492169-131500197:+
Coord C1 exon
chr9:131492169-131492260
Coord A exon
chr9:131494405-131494486
Coord C2 exon
chr9:131495740-131500197
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTTTGGTTTTTTCAGGCC
3' ss Score
10.39
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
CCCTCTCAGATGGAGATGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTCCCTTCAGGAGGCCCCGTGCCATCGCCACAGACCTACAG
Seq A exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTGCAACAG
Seq C2 exon
GCAAAACAACGAGTGGATGAGAAACCCAGCCTGGGAGCCGTGAAGCTGCAGGAGGCCCCCTCGGCTGCCTCCCAGATGAAGCGAACCGGAGCGATCAAGCCTCGGGCTGTCAAAGTGGAGGAGAGTAAGGCCTGACAGTGCCTGGCTGCCACCTCGCCTCTCCCTACTGAGGACGGTGCCGCCATGCGGCCTCGACACAGCCGACACTCGGGAGCCTCACCAGATCCACCGTCCAAATGCGTGGCCCAGACTGAGAGACCTCCCTCCTCTCCACTCCCGAAAGCTCCGTTGTCAACCAGCTTGCACCCGTGGATATATGGCATTGACCCGCTTGCTTTGATACGAAACAAAAAAGCAGACGACTCCTTCATCCCATCTGCTCCTACCGTGACTGTGGAGTGACGCCTCCTGTGCAGTGCAGATTTGCCCTCCCTGCCTCCTCCCTGTCCTGCCGCGCAGCCAGGGCGCCTTCTCAGCAGTGCTTCCGGCCCAGCCGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723-'72-90,'72-88,75-90
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCCACTTTGCCGACAGTA
R:
GGCTTGATCGCTCCGGTTC
Band lengths:
171-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development