HsaEX1029672 @ hg38
Exon Skipping
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131492169-131494486:+
Coord C1 exon
chr9:131492169-131492260
Coord A exon
chr9:131492778-131493058
Coord C2 exon
chr9:131494405-131494486
Length
281 bp
Sequences
Splice sites
3' ss Seq
GTGTCTGTCTCCACCTCCAGCAA
3' ss Score
9.49
5' ss Seq
CAGGTACTT
5' ss Score
8.17
Exon sequences
Seq C1 exon
CCCTCTCAGATGGAGATGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTCCCTTCAGGAGGCCCCGTGCCATCGCCACAGACCTACAG
Seq A exon
CAACTGTCTCAGGTCCCCTTAGCTGGATACTCAGGTGGCTCTGTCGGATGTTGGCGAGAGCCTCTGGTCCACTGCCTTTTCTGCCCGTGCTGGTGTGTGAAGGCAGCACGCTCTGGCCCTGGGCTCCGAGGGCTTGTACAGTCCACCCTTGTTACATGTGGGAGATTCCTGAGACCCCTCTGTGTTTACAAATGAGTGAAACAGACCTGCCTGACCCATGGTGCCCTGTGAGGTTAACACCATCGCTGCAGACGCCATGAGGTATCCCCACGACTACACAG
Seq C2 exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTGCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENST00000357304fB23526
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAGATGAAAGGCTTCCACT
R:
ACGTAGTGTCCCTGCACAGAG
Band lengths:
157-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains