RnoEX6016411 @ rn6
Exon Skipping
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11245115-11248558:+
Coord C1 exon
chr3:11245115-11245206
Coord A exon
chr3:11247131-11247212
Coord C2 exon
chr3:11248430-11248558
Length
82 bp
Sequences
Splice sites
3' ss Seq
CCTGCCTTTGGTTTTTTCAGGCC
3' ss Score
10.39
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
Exon sequences
Seq C1 exon
TCCACTCAGATGGAGTTGAAAGGCTTCCACTTTGCCGACAATAAACAGAATGTTTCTACCGGAGGCTCCGCACCATCCCCGCAGGCCTACAG
Seq A exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTTCAACAG
Seq C2 exon
GCCAAGCGAGTGGATGAAAAGCCCAGTCTGGGAACCGTGAAGCTGCAGGAGGCCTCTTCAGCCACCTCCCAGATGAAGCGAACTGGAGCAATCAAGCCACGGGCAGTCAAGGTGGAGGGGAGTAAAGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217-'56-73,'56-70,59-73=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.993
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCTTCCACTTTGCCGACAAT
R:
TGGCTTGATTGCTCCAGTTCG
Band lengths:
170-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]