RnoINT0118616 @ rn6
Intron Retention
Gene
ENSRNOG00000010217 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:RGD Symbol;Acc:1595906]
Coordinates
chr3:11245115-11248469:+
Coord C1 exon
chr3:11245115-11245206
Coord A exon
chr3:11245207-11248429
Coord C2 exon
chr3:11248430-11248469
Length
3223 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
TCCTGTCCATCTATCCCAAGGCC
3' ss Score
7.94
Exon sequences
Seq C1 exon
TCCACTCAGATGGAGTTGAAAGGCTTCCACTTTGCCGACAATAAACAGAATGTTTCTACCGGAGGCTCCGCACCATCCCCGCAGGCCTACAG
Seq A exon
GTAAGATGAGCCCTGGGGGCTGGGGCTCATTGCCAAGTATTCCATAAGTCACTTCAGAGAGCCCATGGGCCCAGGGAAGGGCATTGTAGCATGGCCCCCCTTGTATACCTGAGTGTTACTGAGGCATCCTTGCAACGTGCTCATACTGTTAGTTATGGCAGAGTGAGTCCTAGGGAAAACAGATTTGTTTCTAATTCTACAGGGTAAGATGCTCCGAGAGGTGAGAACTTTCTGGGGTGTCAGCCACAGCCCCACGGTCTCATATCCAAACTCACCCTCTGATCCCTATTAGAGAACTTCTTAAAGTTGGATGTGGGTGGCCTTTCTTCCCAAACCACAAACTGGTACCTACTGTTTACTTCCTTGGTCTGGGTTCTCTGCCTCCAGTAACCATTGGAGGTTCCCCTTGGCTTGATTCAGAGGTGTCTGTTGGATCATGGCAGGGGCTCCTGATTCCATCCTGCTGGGTTGAGGATGTCGCTCTGGGCCTGGGCCTGAGAGAATATAGAGCCTCATACCTCGTGTTTAAACACCGAGTGGGACAGACAGATCTGTAGTCTTTCTAGAGGTCACTCAGCAACACACGTGCAGGTCGAGTCCCACCGGCCGGGCCCCACTCTCCTGACACTCCGGCGTGCTGGCCTCCGTCTTTCCCCCAAGTCACGGCCATAAAGTGAAGGCCCCTGGTCTGTCTTAACACCCCTGCTGTTGTGGCTTTTGTTTGTGCATGAATACATTCTATTCTGCTGCCAATGCCTGGCCGAGGGCCCGTACAGCGGAGTCATGCGAATGGAGGAAGGGAGGGAGGAACCTTCAGGAAGGCGCACACACCATAGTCCTGCCTGCCCAGTGTGACTGCGGAAACCTGGGCTCAGTAGGCTGTAAGGAGGGAACAGTCTTGAAAGAAACTGGGCACTCTGTCCACAGATTGAAAATATTTGGGAGTGGGAAGGGGCCAAAATGGTTTCTTGTCACCATTTCTAACCTGTGTGGTATGGCTGCCGTCTGCATAATGACTGTTAGCAGTCGAGAGAGGATTTGTCAAGGGTAAGGAGGAGCTAGGAGTCGATCAGTGTCGAGGGCAGGTGTACTTCATGAGGCTCTTGGTTCCATACCCAGAACCAAACCAAAAAACAACAGAACAAAAAAAAAAAAAAAAAAAAAAAAAAACAGACAAAACCCATCTCCTGGAGAACATGGCTAGTTACATGTACATACCGTGTTAATTATCTGTGAGGCCTGGGACAGACTGTGACATGATGGAGGGGCTGCTGGAGGTGGGAGACACAGGCATCATGGTGACCAGAGGGATCGCTTTGACTCTTGTGTACTGCCCCAAGGTTTTCAGGAAATGAGCAAGTGAGACATGCCTTGCAAAAAAGGAGTCCTCAGTTAGAAATTAAAGGGATGTGCTGTCCCCATGATAACTTTGGGCTATGAGGGTACCTAGCACTAGACAGCCTCGTCCCTGGGAGACTCGCTGGCCTCTGCGTTGTACTCTTTCTTACAGATCTTTTTCTCATGAAACATCTAAGCCCTGGGGCCTAAATGCAGTTGTAGATCTCTCCCCTCCCCGACAAGTGAGAACGAGGCAACCCCTGGTATAGCTCCTGGGAAGCCACTGCAAGCCTTCATGTGGACACTGAATCACATTGATCCAGATCCCACAGCCCGAGGATGGCACTGGCTGTCTGCTCCTCTCCTGGGTGTATCTCCGGGGAGTGCCGAGGGACACTGTGGGCACTGTGTGACCACCCTCCTCCCTGTTTGCATTCTTGGCTGTCTCAGATCTGTGCTTTCCGTCTGCTAAGGCCTCTGGCCAGAGAGCCTCCCTGTCTCCATCTGCCTCCTTGTGCTGCTAGGCGTTGACTCCTTCTCTGTGGTGACGCGTGTGTATTCTCAACCCTGCCTTTGGTTTTTTCAGGCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTTCAACAGGTAGAAGATGGCTTCCCAGACCCTGCAGCCCTGGACACTTAGGCCTGTCTCCCAGCGCCAAAGGAGAGGGGACCGTCCAACTGATGGACCGTTTTTATTAAGGGAAATGTGCCCTAGTGCTTAGAGCTGGGCCACCTGAGTTTCTCCTGGCAAAAGCACTTCTCTTGATGGGTGTTTGGATCCTTCCTTGTCCTGCAGAGAAGGGAGGAGCCTGGTTCCCACAGGAGATGCCAGAAGGTGTACTATGTGCAGCCATTTACGGCTGTCCTGGCGCTCGAGGAGACACGGTTAGGCCCGGGGTTAGCTCAGAGGCTGGTGTGTGTGTGCTAGCGTCAGTGAGTGCTGTGGCATGTCTCTGTCTGCCTGGGTGGGGTCACAGGCAGGATGCAGCCCCCCCCCACTTTACAGTGACGGCTTCTCTCTCCCCGTACGCCCTTTTCTCTTCCTCCCGTAAAGCTGGGCTGGGCCTTCAGAGCTCAGGACCTTGGTCAGGCCTGGAACTTAATGAATTTGTCAGTGACAGGTGGAGACTGTGAGGTCGATGGCTCTCTTTTTGCCTCCCTTTCCTAGTGTTCCTTGGAGGTCACTGCTCTTGCTCCTGGATGGGTTTCTTACCCTTTCTCCCAGAGCTGAGGGCATAACTCAGGGGCAGAGCATTTGCCTAGCCTGTGTGAGGCCCTGGGTTCCAACTCCAGCTGACAAAACAACAAAAACCACCCAACAAAGTTTACCCCAGAAGTTAGACGAGGCCTCGCGCAGGCAGCCGCTATGCAGAGTCCTGGCCAGTGAACCCTGAGATGAGAGGGGGTCCTGGGGAAATGCCAAGGGATACTTGGGTGGGGGCTTGATTGAATCGTGTGCCAAGATCTAGGCGATCTGTTGGCTTCATCCCTCTACTGTTAGATGGGTACCCAGGCCCATGGGGTAGATTGGCCTGCTGAAGGGGCTGTTTGCTTGCCAGTGGGGCACAGGGTGCACTGATTTGCAAAGGCCCTTCCCATCATCAGCATTGGGACATGAAATGTTCGCTAAGGGTGTCTTACCGCCTTTCTGAATCACTGCACCCGTGGGAGGGACCAGGGCAGTTCTGGCTGCACACCAGGCTCCTCCCTGGTCTTGTGAAGGTAGCTTTTGGTCTGACACCGGAGCAGGAAGGGAGTGGTCTCTACACATTTTGCCCTGCAGTCACTTTGATTTTCCTGTCCATCTATCCCAAG
Seq C2 exon
GCCAAGCGAGTGGATGAAAAGCCCAGTCTGGGAACCGTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010217:ENSRNOT00000013546:25
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]