BtaINT0118619 @ bosTau6
Intron Retention
Gene
ENSBTAG00000004400 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr11:101643021-101644848:+
Coord C1 exon
chr11:101643021-101643102
Coord A exon
chr11:101643103-101644319
Coord C2 exon
chr11:101644320-101644848
Length
1217 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
CTCCGTCTGTCTGTCCAAAGGCA
3' ss Score
10.23
Exon sequences
Seq C1 exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTTCAACAG
Seq A exon
GTAGAAGATGGCTTTCCAGACCCTCCAGCCCTGGACGCTTAGGCCCGTCTCCAAGTGCCAAAAGAGGAGGGACTGTCCAGCCCGTTTGCGTGCTCCTCTTAGAAAGAGACATGCCCTGGTGCTTAGAGAGTGGGCGCCGGGAGCCCGCGTCCCTCCTGGAGAAGGCGCTTCTCCTTTTGCCGGGCGTCTGGATCCTTCCTTGTTCTGCTGAGAAGGGAGGATGCGGATTCCTCAGAGGAGGTGACGCCGGAAGGGGGACTCTCCCTCCGTAGCAATTGGGCTGTGAAGGCGCTGGGACCCGGTTAGGCCCGGGGGTCAGCTCTAGAAGCCGGGGGTATGCGGGCGCGTATGCGCCTGGCGTGTGTGCCTGTGCGTGCCGGCCTAGTAAGTGCTGTGTCTTGTCCTTGTCTTGGCCGGGTGGGGTCCAGACGGATTGACATTCTCCCGTTTATAACAAGAGGGCTGGCTCAGCATCTTTGCCTTCGGCACGATCTCTTCACTCCTCTAAAATGTGACCAGGCTCCAGAGCTCAGACAAGTCAGGTGTGGGATGTTAGCGAGACAGCCTTCCCGGCTGGTGGAGGTAGAGGCTCCGTTGTTCAGTTCACTTCTCCTAACTCAGTTCCCCAAGGGTCACTCTCTGAGTTGCTAGGCCTTAGCTTCTAAAGCTTTCTTGAGAACTCACAGCACCGTGTGAGGGGCAGAACCAGGCTGCTCACTCGGTGACACCCCTTACTGTGCAGAGTTGCAGCGTAAGGGGGCCCTGGCTGTGACTCTGGAGGTCACATTAGGGGCTTGAGGAAAGGCTCCCACAAAATGGGAGTCGGGAGGGTTGAGGATCTGGGAGGCCGAGTTGGACGAGAGGCCCCATGCCCCTGCAGCACGGGCTGGGGTGCACTGATTTGAGAAGGTCCCTGGGGTGGCCTTGGGTGGGCCACTCCTGCAGAGGCCCCTGGGCGGCACAGATGCTTCCCCGGGACCTGGGCCTCCTGCCTCTCCGAATCACTCACTCAGCGCCCTGGGAGGGAGCAGAACCTTCTCAGGCCAGGGTCCTGCCCAGGAGAGGCACTTCTGAGTCTTGGTCCTTGACTGGAAGATGGGCTTCTTAGGGTAGCTTTCCTCTGACGCAGGAGCAGGAAGAAGGTGGTGGGGCCATGGGTCCTGGCAGGTATGTCCGCGCAAGGCTGACTTCCTCTGTCTCCGTCTGTCTGTCCAAAG
Seq C2 exon
GCAAAGCAGCGAGTGGATGAAAAGCCCGGCCTGGGAGCCATGAAGCTGCAGGAGCCACCCTCAGCCGCTTCCCCGCTGAAGCGAACTGGAGCAATCAAGCCCCGGGCGGTCAAGGTGGAGGAGAGCAAGGCCTGAGGGGCTGGGCCCGGCCTGCCCGGGAGGACTCTGCCCTTGGCCTCGCCACCGCCTGATGCTGGGGAGTCTCACCGAGGGATCCCCTGTCCACCTGCCTGGCCCGGACTTCGAGATCTCCCTTCTCTCCTCCACTCCCGAAAGCTCCGTTGTCCAACCGGCTTGTACCCGTGGATCTCTGGCATTGACCTGCTTGCTTTAATACGAAACGAACAAGCAAATGACTCCATTCCCATCTCCTTTCCATCACGACCGCGGAGTGACCGAGCGTGGAGTGACCGAGCGTCATGCCATGCAGACTAACCCCGCCCTCCCCCGCTTCTTCCCCTCCCCGCCTCCCGTCCCCGGGCACCGTGGTCTGGCAGCAGGGCCGTTTTAGTTTGAGGCTTTTTGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000004400:ENSBTAT00000010939:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGCAGGGACACTACGTTC
R:
AATGCCAGAGATCCACGGGTA
Band lengths:
344-1561
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development