GgaINT0123939 @ galGal3
Intron Retention
Gene
ENSGALG00000003776 | PRRC2B
Description
NA
Coordinates
chr17:6842602-6843727:+
Coord C1 exon
chr17:6842602-6842683
Coord A exon
chr17:6842684-6843067
Coord C2 exon
chr17:6843068-6843727
Length
384 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGTG
5' ss Score
6.13
3' ss Seq
CCTTTTCTGTGTGTCAAAAGGCA
3' ss Score
7.72
Exon sequences
Seq C1 exon
GCCTAGCTCTGCCAGCCCAAATGGGAAGCCATCTGGACCAGCAGTTAGTATGGGCTCTGTGCAAGGACACTATGTGCAACAG
Seq A exon
GTAGTGTATGTCAGTAGTCTAACCCAGTAGCGTCTGTTCTTCTGCATTATCACCCTTGTTCTTGTACTTGAGAGGGTGACAGTGTAGTTAAGCTATATGTGGAAGTTATTTTCCTCGCAAGGAAAGCAAGAGAGTGGACTGGGTGGATGCTGTACTGAGCCCATGAGTAATGCTTGGTGATGGGGGGTCAGGAAAAGTTAGAGGATTGCATGTCACATGGTGCTTATGTTGAATTTTTGTGGGTGTATTTGAGATCCTTTGCATAAGGTGTTTTAGGGTAGCAAAGGGTGGCAGAACAGCTGAATTTTGGAGCAAATTTTATGTCTTGCATGAATGATGGTCACCAGTGTTTTTTCTAATGCTTCCTTTTCTGTGTGTCAAAAG
Seq C2 exon
GCAAAACAACGGGTGGATGAAAATAAAGCCAATCTGGGAGCAGTAAAGCTGCAAGAAACAGCCTCCACAAGCCAGATGAAACCAGTGCGCACAGGAGCGATCAAACCTCAGGCAGTAAAAGTGGAGGAAAGCAAGGCCTAGGAGCACAGCTGATGCCAGCTGGTCCTGCTGGCTGATAGGTCCTACAGCTCAGACTGAACCCCACTGGATCTCCTGAAAATCTCACCAGACCTACGCCTGCCCCACACTGACTGGCTACAGTGACATCATCCAAGTCCCTCTCCTAGCAAAGCAGTTTGAAACGGTGGATATGACATTGACCTGCTTGCTTTGAAACAAACCAACCATGTGACTTTTAAGTGGCTTAAGCCTTTTTTTTCTCCACCCCATGCCCCATCCACAGGTAGCTGTGATAGCTCACTTGGCAAAGCCCATCCTTCTCCTTCCCTACTTCTGTCTCAGCAGAGTGGCAACTGAAGGAGAGGGGGTTACTTTAGAGGTTTTTCATTTTAAAGGCAGCTGAGGTTTTTACAGAGAAAAAAAGCTATATCCTTGTTTATAGCAGAACTTTTATATGTTCTCTCACTTTTTTCCCTTTCTTTCTGCTTTCCTCATTCCTTCCAGAAGAGAAGTCCCATTAACTAAAATTATGTTCTGACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003776:ENSGALT00000005992:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCATCTGGACCAGCAGTTA
R:
ACTGCTTTGCTAGGAGAGGGA
Band lengths:
352-736
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]