MmuINT0023965 @ mm10
Intron Retention
Gene
ENSMUSG00000039262 | Prrc2b
Description
proline-rich coiled-coil 2B [Source:MGI Symbol;Acc:MGI:1923304]
Coordinates
chr2:32226945-32234537:+
Coord C1 exon
chr2:32226945-32227036
Coord A exon
chr2:32227037-32230610
Coord C2 exon
chr2:32230611-32234537
Length
3574 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TCCTGTTCATCTGTCCTAAGGCA
3' ss Score
7.17
Exon sequences
Seq C1 exon
TCCGCTCCGATGGAGTTGAAAGGCTTCCACTTTGCCGACAGTAAACAGAATGTTCCTACTGGAGGGTCCGCACCATCCCCGCAGGCATACAG
Seq A exon
GTAAAGATGAGCCCTGGAGTTGGGGCGCATTGCCAAGAGCCCATGGGCCAGGGGAACATGGTGGAAGGCATTGCAGCATGGCCCCCTTTGTGTTTCTGAGTGTCACTGAGGCGTCCTTGTCACGTGTTCATGCTGTAGCTAGCTGTGGCAGAGTGCGTCCTGGGGAAATTGTGTTTGTTTCTAATCTGCAGTGTATCAGGCTCTGAGGAGTAAGAACTTCGTGGGGTGGCAGCCACAGCCCCGCGGTCTCATATCCAAACTCACCCTCTGACCCCTATTAGAGAACTTCTTTTTTTTTTTTTTTTTTTAAATTTATTTATTTATTTATTATATGGAAGTACATTGTAGCGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCGGGTGCTCTTACCCACTGAGCCATCTCACCAGCCCCTAGAGAACTTCTTAAAGCTGGGTGTGGGTGGCTTTTCTTCCCAAACCACAAACTGGTACCCGCTGTTGGCTTCCTTGGTACGGGTTTTCTACCTCCAGTAACCATCAAGGTTCTCCTTGGCTTGATTCAGAGGTATCTGATTCTGTTGGATCATCGCAGGGGCTCTTGATTCTCTCAAGCTGGGTTGGGGGAGCAGCGCTGGGCCTGGGCCTGAGAATATACAACCTGATACCTTGTGTTTAAGCACTGAGTGGGACAGACAGATCTGTAGTGTCTTTCTAGAGGCACCCAGGACACACTGTACAGGTGGAGTCCATTCGCCTGACTCTGGTGTTCCGGGCTGACATAAAGTGAAGCCGCCGCCCCCCCCCCCCCTCGTCTTACACTCTTGCTGTGGTGGCTCTGTTTGTGCGGGAGTACATTCCGTTCTACTGCCATTGCCTGGCAGAGGGCACACACACTCCATGGTCGCCATGGTCTGCCTGCCCAGTGCGATGGCAGTGACCTGGGCTCAGCAGGTTGTAAGGAGAGAACAGCCTTGAAAGAAACTGGGCACTCTAGCCACAAATGGAAAATATTTGGGAGTGGGAAGGGACCAAAAATGGTATCTTGTCATCATTTCTAAGGAATATAGTATAGCTACTGTCTACATAGTGTTTGTAAGCAGTCTAGAGAGGATTTTCCAAGTGTATAGGAAGAGCTGGGTGTAGTGGGTCAGTGTAGACAGTGCATGCGTACTTAAGACACATCAGGCTCTGGGTTCCATTCCCAGAACCAAACAAAAACAAAAGAACAGGAGGCTAGAGATTGAGATCACTGGCTGCTTGCTTTTCCAGAGGTTCTGAGTTCAATTCCCAGCAACTACATGGTGGCTCACAGCCTTCTGTAATGGATCCAATGCCCTCTTCTGTTGTCTGAGGACAGCTACAGTTTACTCATATAAATGAAATAAATAAATAAATCTATCTTTAAAAATAAATAAGAATGGCCTCTATAGGCTCATATTTAAAAAACAAAACAAGACAAAAGAACAAAAACAAAACAAAAAGCCACATACTGGAGAACATGGCTAGGTTACATGTAAATAGCATGTTAACTTTATCTGTGAAGAGACAGAGGGATATGAAGACACAGGCATTGTGGTGACCAGAGGGATTGCTATAACTCTTGTATAGCAAGATTTTCAGGAAATGGGCGAGGGGTCCTCAGTTAAAAATCAAAGGATGTGCTTTTCCGATATGGTGGTATCTAGCACTAGACAGCCTCATCCCAAAAGACTCGCTGGCCTCTGCACAGTACTCTTTCTTACAGAAGACCTTTTTCTCATAAAACATCTAAGGGCCCTAAGGACTAAATGTGGTTGTAGATCTCTCCCCTCCCCCCACAAGTGAGACCGAGGACCTCCTCTCCCTTCCCCCTGGGGTAGCTTCTTAGAAGGCTGCTGCTAGCCTTCATCTGGACACCGCACCACACTGGTCCAGATTCCACAGCCTGAGGGTGGCACTGGCTGTCTTCTCATGGCAAGGGCTGTAGCTCCTCTCCTGGGTGTGTCTCCGGGAGGTGCCAAGGAGCACTGTTGACCGCCCTCCTTTTGCATTTGCGTTTGCATTCTTAGCTGTCTCAGGTCTGTGCTTTCTGTCTGCTGAAGCCTCTGGCCAGAGGGCCTCCCTGTCTCGATCTGCCTCCACGTGCTGCTAGGCATTGACTCCATCTCTGTGGTGACACATGTGTATTCTCAACCCTGCCTTTGGTTTTTTCAGGCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTTCAACAGGTAGAAGATGGCTTCCCAGACCCTGCAGCCCTGGACACTTAGGCCTGTCTCCTAGCGCCAAAGGAGAGGGGACTGTCCAACTGATGGATGGTTTTTATTAAGGGAACCGTGCCCTACTGCTTAGAGCTGGGCCACCTGAGTTCCTCCTGGCAAAAGCACTTCTCTTGATGGGTGTTTGGATCCTTCTTTGTCCTGCAGAGAAGGGAGGAGCCCGATTCCCACAAGAGGAGATGCCAGAAGGTGTACTATCTATCCACAGCCACTTACGGCTGTCATGGCGCTCTAGGAGACACGGTTAGGCCTGGGTTAGCTCAGGCTGGGTGTGTGTGCGTGCTAGCTCTAGTGAGTGCTGTGGCATGTCTCTGTCCTGGGTGGGATCGTGGACAGGATACAGCGTCCCCCACTTCACAGGAAGGATTTCTCTGTGTCTTTCCCTGTAGGCCCTTTTCTCTTCCTCCTGTAAAGGTGGGCTGGGACTTCAGAGCTCAGGACCTTGGTCAGGCCTGGGACTTAATAAATTTGTCACTGAGAGGTGGAGATTGTGAGGGTGATGGCTCTCTTTTTGCCCCCCTTCCCCAGTGTTCCTTGGAGGTCACTGTTCCTGCTATGAGATGGGTTTTTAACCCTTTCTCCCAGAGCTGAGGGCATAACTCAGGGGCAGAGCACCTGACTAGCATGGGTGAGGCCCTGGGTTCCACCCTGAGCTGACAGAACAACAAAAAACACCCAACAAAGTTTCCCCCAGAAGTTAGACAACTGCGGTTACCCTGTGCAGGCCACCACTGTGCAGAGCTGCTGGCTAGTGTAACCCTGAGATCAGGTGGGGTCCTGGGGAAATGCCGTTATTCAGAGACACTTGGAATGGGGCTTGACTGAATCATGCATCAAGATCTGGGTGATCACAGTTGGCTTCATTCCTCAGCTGGGTGGGTATCCAGCCCATGGGTAGATTGGTCTGCTGAAGGGGCTGTTTGCTTGCCCATGGGGCACAGGGTGCACTGATTTGAAAAGGCCCCTCCCGTCAGCCTTGGGACCTGAAATGTTCACCAAGGATGTGCTACTGACTTGTCTGTGGAGGACCGGGAGTCTTCCCGCCTTTCTCAATCACTGCACCCTTGGGAAGGACAGGACAGTTCTGACTGCACGCCAGGCTCCTCCCTGGTTCCTGTGAGGATAGCTTTTGGTCTGACACTGGAGCAGATAGGGAGTGGTCTCTACACATTTTGCCCTGTGGTCACTTTGGTTTTCCTGTTCATCTGTCCTAAG
Seq C2 exon
GCAAAGCGAGTGGATGAAAAACCCGGCCTGGGAACCGTGAAGCTGCAGGAGGCCTCATCAGCCACCTCCCAGATGAAGCGAACCGGAGCAATCAAGCCTCGGGCAGTCAAGGTGGAGGGAAGCAAAGCCTGAAGGTGCCTGGGTCTCTTGCCTCACCTAACAGGGACGGTGCGCCCCACACCCTAACAGGGATGGTGTGCCACACCAGCCTGGACAGCCACCGCCTGGCTTGGACAGAGCTCTCTTCCATTCACGAAAGCTCCTGAGAGTTCCATCGTCAGCCAGCCTGCATCGTGGACATGTGGCTTTGACCTGCTTGCTTTGGTACAAAAGAGCAGACTTCCTCCTTCCCACCCCTCTGCCCAGTGACTGTGGAGTGAGCCTCCTGTGCAGTGCAGACCTGCCCGCCCGCCCGCCCGCCCAGTTCCCTAGGCACAGTGGTTTGGCAGCAGGGTCATTTTAGCTGGAGGCTTTTTGTTTTAAAAAGCAGCTAAGGTTTTTACAAAGGGGAAATGAGAACAAAATGCTAGCTACATCTGTATAGCTGAACTTTTATATGGTCCTCGCTGTCCTCTCTCTGCTCTGCTGTCCCCAGTGGTCACCTTTTATCTCCGTCCTGTTTGACATGTCACAGTGCTACCTTAAGAGGTGATTCTTAAGAGTCACACACACACACACACACACACACACACACACACACACACACCCCGGTTGGCTAACCGTTGGGGTTTGGAGGATGTGATTGGACATTCTGGTTGGTCCCTCACCACCTTGGGCACTGTGAAGTTGGTATCTGAGTTTAGTTCCCTGGTGTGGAGTTAATGTTTCAGAATAAGAATTATCTGTTCAGGGCCCTTTTGCTGTCATTGGACACAGTGAGTATTGAGCACCGGAGGAATTGTGGAGTTTTGTAATCCAGATTGGCCCCACTTGGGGACTGCATCTTGGGCTCCGTGCTTTAGCCCCCTGGGTGGCTTTGTTCCCCACTCATTTCCTTTCCTCTTTGTGGAGCCTGCTGTGTCCCTCTGGATCCCTGTCCATTCACTCCTCACAGCTTATCACCAAAATCAATATAAGGACACAGGTGAACACCTATTAGTCAAGTTTGCGACAGGAAAGACTATGTATGGCACATTCATCTTCCGTCCTTCACTCCTGGTAACAGGGCAGGGTGTTGGGTAGGGTTTCTAAGCTATAGGTGTGTTACCCTTCCTTAGAGAACTGGACAGGGTCAAGGTATAAGTGGCCTACAGAGAAACCTATGCAGCCTCAAAGGAGGCTGGTGGTGTCTAAAGGGTGGTGTCTTGGGGCTACTGCTTGCAGGTTTTGTGTGAGCACCTGTATGCGAGGCTTCTTGCTTTCACTAAGAACAAGGAAAATTTCCCATTGCTCAAAGGAAAATGAAGTGAATTTCAGGGTGCTCAGCTGCTGCTTAGGACCCCCATTTAATCACCCATCTGGGGTGTTGGAGACAGCCTGCTTCAGAGAGCTCATAGTTGGTGGCAGGGCTGGGACAAGCATGTGGGTCTGTCCTCAAGTGTCACCATGGGCATGAGAGCAGAGAAGCAGCTTAGAAGCTCTGAAGTGGCTTCGCCCTGCCTAGTTGGTTGTTGAAGGAAGCAGAAGTCTGTTTCCCCCGGCAGGTACTGCCACACTGTCCCCAGCATTACCAGTCAGGGCAGCCTTGGTGCAGTTTCATTGCAACTGCAGCCCTCGGCTCCTTCCTTCCCACCTCCGACACATCTCCTCTCTTCTCGCATCCCTCCTCAGAAGCACTGTCCACTTAGGAGTCCCCAGCACAGATCTGCCTGTGCCCCTATCAGCCCTTCCACCCCCCGGAAGTGACCGAGTCCTCTGCCCCACTGCCAAGCTCTACCCCATAAGTCTCACTCAGTAAAAGCCACACAGTCACCTCTTAGAAATGCGGCCAGACCCACCTCACCCAATGCTTGGTGGGCATTATGTGTCAAAAGAAGCAAACATTTTTCTCTTTCAGAATTTCACAGGATGCTGTTACAAACTCAAAATGTGCCCTTTAGGTGAGCCTGCTGTCAGAATGGCAGTACTCCCTGTTTTAAGAAGAAAAATTAGGAGGTCACCTGTTTTCAGTCCTTTCTCTAACCCTGTATTTCCCTCCTGCCTCCCACCCTAAATAAAAACAAGAAACACTAGAATTTATTTATATGTATTGATGTTGTAGGTCTAGATGGAAAAAAAAAAGTAAATGTCCCACTGCTCTGTTTATATAATGTCTGAATTACTCTGTGCAGGAAAGGCCAGGAAATTGCATGTGAAATTTGGTGTGCTCACCACCTCTGTGATCTCAGCTGTGGGCTCTACCCCTCTGAGAGGCACATTTGCAACTAGACGCTGAGGACAGAGGGCAGGCTTCAGGCCAAATGTCCCTACTCCTCGGATGATCTGGTCAAGCCAAGTTTTTAGTACAGAGGTGTTTTAAGGTGCAATATCTCTTTGTGTGGTTTTTAGAGTCAAGCTCAAAGTATAATAGAACTTGGGCCTTATTTTGGTTTCAAACCCCCATCTTTAGATCACACATAAAAACAGGAGCGTCTGTCAGGGTGCCATGGCCTTTGGTGGGAACAGGTAAAGTCCAGCCCTGCCTTTTCTACTGCTGAGATGGGTGGAGGTGGGCAGAATCTTTTACTCCTGCCTGCTGAAGTCACCTCCTACTGCTGGTGGCTTTGTTGGTGCCACTGATGGTGAAATCCATGGTTTGGCAACCAGGACTCTTCAGTCTGTTGGTCCTGATGCGGCGTGTAGCATCTGTCGGTGAAGACTTCTGCCGACTGCATTTAGTCTGGTCTCTTAACAGTTGCTTTCCTTGTCTGATTCCCAAGTTTAGCATTTTCAAATTCAGAGTTCACAGAACACTTCTGGGTCTAAGCTTCCTTAAGGGGGATAAACAAAGGATGATTGCAGTACACATTTAGAAATGCTGGTTCACATCCAAAGCCACGCTTGCTCTGCCACTTCTAGAGATACTTGGATAACACTGTCCACCTTGCTGTCCTGTCCTCTGGAGCCACCTTCCAGATGGTCAGTGATGAAGTCGTGAATGATTTGACACTCAGGGCCCAGGGCACAAGAGTGTACCCGCTGAGGCCATGAGGCAACTCTGGCTAAGTCCGCCCCCCAACATCCACTGGGGTCCCCACTCTGCCAGGTACCTGCATGTTAACTTTCATGTTCGCCTTGCCCTCATTTCCAGCAAGTCTGGGTTAGAGGGTATGTTGGGAATCTTTCACAGGCAAGGGCACAGAAGTCTGGCTTCTGTATTCTTTGATGAGTGGAAAAGCCAGCTCTTTGTGAGATGGCTCTAAGACAAGTTAGGTCATGTGGAACAGAGTGGTCAGCGTTGGGGATGAGCACAGTCACCCAGCTGTGCTCTCCACTGTCTACCAGCTCTGACTAGTGATCTTCCAGGTGCATGACACCTGCAGCCCCCAGCTGCTTGCTTCAGACCTGCAACCTCCCCAGGCCCCATCTTTGGCATGTCACAATCCTGGAGCAGCAGTTCCTGTGAAGGCTCCTTAGCTGAAGGGTCCTGTGCTCTAGGCTTTCCACCTCAAACCTTTTATAGAAAAGGACTTGGGGGATTGTTCTTTTTGAGGGTCCTTTTGTTTTCCTTTGCTTTTCTTTTGGCCTTCCCTCTGTCTTTCACTTAGACCAGCTATTTGAAAGGGCAGACGATGCTAAAGGTGTACTGTGCAGCTTGTTTAGACGTGATATGGGGAACTTCTTCGGATGGGAAATGGAATCGTGAATTCACCCTCCCTTCCCTCCGGGTCAGTCCCTGTTGTTTCTCCTTTCAAATATGTGATTGTACTAGGTCTTTCCATACGAAAGAACTCTCCTTATTTAAATAAAAAAAAAGTATAAAAAAATAAAGCCAAACATGCTTTCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039262:ENSMUST00000036691:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types