HsaINT0016691 @ hg19
Intron Retention
Gene
NA
Description
NA
Coordinates
chr9:134369792-134375575:+
Coord C1 exon
chr9:134369792-134369873
Coord A exon
chr9:134369874-134371126
Coord C2 exon
chr9:134371127-134375575
Length
1253 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
TCCCATTCATCTGTCCAAAGGCA
3' ss Score
7.39
Exon sequences
Seq C1 exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTGCAACAG
Seq A exon
GTAGAAGATGGCTTTCCAGACCCTTCAGCCCTGGACACTTAGGCCCGTCTCCAAGCGCCAAAAGAGAAGGGACTGTCCAACCTATCTGAGCGCCCCCTGTCTAAAGACAGCCATGCCCTAGCGGTTAGAGCACAGAACCGGGAGCTGGGCCGCCCGCGTCCCTCCTGGCGAAGGCATTTCTCCTCTTGACGGGCGTCTGGATCCTTCCTTGTCCTGCAGAGAAGGGAGGATGCTGATTCCTCTGAGGAGGTGGTGCTGGAAGGTGGACCAGCCCTGGCAGGTCGGGGCTGAGGCGCCCTGGGAGACTCGGTTAGGTTTGGGGGTCGGCTTTAGGAGCCGGGGTGCGCGCGCTGGTTCTAGTCAGTGGTGTGTCTCATCTTTGTCTTGGCTGGGTGGGAGCACAGGTGAAATTAAGTTTTCCCATTTTATAATGAAAAGGACATCGCAGTGTCTTTTCCTGCACGCACTATTCTCTTCTCTATTCTCTAAAACGTGCTGGGGCTCAGAGCTTAAGCCCCTCAGACGTGGGTTTTTAATCAGTCACTGTGCCTGGCTGGTAGAGATGGGAAGTGATTGCTCTCATTGGTTCCCCTAGGGGTCATGAAAGTTGTGTGGAATGAGCTTCTAAAGCTTTCTTCCAGAGTTCAGACCTGGTGGGGGGCAGATGCGCTGGCTGCTCTGTGACTTCCCCACCCCACTCCCCGTGTAGAGCCACAGACCAGGGGAGCCCTGACTAGGAATGGGGCCCCAGGGAAAGGTTACAGAGTGGGAATGGTGGGGGGGTTGGCTGAATCGCGGCCAGAGATCTGTGGGGGCCAAGTCTGCCTAGGGCCCCAGCAGACAGTCGGGGGCTCCGAGACGTGCAGGGGGCACTTGGATCTACTTGAAGGGGCCTTTTTTGCCTGTGGGGCAGGAGGTGCACTGATTTGAAAAGGTTCTTCCAGTTGGCCTTGGGACCAGAACTGCTTCCGCCCTGGGATGTGCCATCGCGGAATTCTTTGTGGAGGACCCGGTGTCTTCCTGCCTCTCCGAATCACTGCACTCAGGGCTTATGGGGAGGGAGCAGAGACGGCACTCGCGCCACTTTCCTTACTAGGAGGGGGGTTTCTAAGTCTGGTCCTTCAACCAAGGGACTGACAACTTAGGGGAGCTTTCCCTGCAACTCAGGAGCAGGAAGGGAGTGGTGGGAACTATGTATCCAAACACGTTTCAGCGTCAGGGTCACTTTGTTTTTCCCATTCATCTGTCCAAAG
Seq C2 exon
GCAAAACAACGAGTGGATGAGAAACCCAGCCTGGGAGCCGTGAAGCTGCAGGAGGCCCCCTCGGCTGCCTCCCAGATGAAGCGAACCGGAGCGATCAAGCCTCGGGCTGTCAAAGTGGAGGAGAGTAAGGCCTGACAGTGCCTGGCTGCCACCTCGCCTCTCCCTACTGAGGACGGTGCCGCCATGCGGCCTCGACACAGCCGACACTCGGGAGCCTCACCAGATCCACCGTCCAAATGCGTGGCCCAGACTGAGAGACCTCCCTCCTCTCCACTCCCGAAAGCTCCGTTGTCAACCAGCTTGCACCCGTGGATATATGGCATTGACCCGCTTGCTTTGATACGAAACAAAAAAGCAGACGACTCCTTCATCCCATCTGCTCCTACCGTGACTGTGGAGTGACGCCTCCTGTGCAGTGCAGATTTGCCCTCCCTGCCTCCTCCCTGTCCTGCCGCGCAGCCAGGGCGCCTTCTCAGCAGTGCTTCCGGCCCAGCCGCCCATCCCTAGGCACAGTGATTTGGCAGCAGGGTCATTTTACTTTGAGGCTTTTTGTTTTAAAATGTAGCCAAGGTTTTTACAAAGGGGAAAGGAAAAGAAAACAAAAACGCAAGCTCCATGTGTATAGCTGAACTTTTATATGTTTCTTGCCAGCCCCTCCGCTCCCTTCCATCTCTAGCCTCTGTCCTGTTTAGTTTGATACGTCACTGCAGTACCTTAAGAGGTGACTCTTAAGAATGCATCCCCTCCTGATTCCTCAGCTGGTTCACCCTTGAGGTTATTTGCAAAAAGAAAAGGAGGTTCTTGAGGGCACCGATTGCGAGCATTCTGGTGCCTGGCTCCCCGCCTGGGAAGCGATGGGGTGCTCAGAGCAGCAGGCAGGTTGGGGGAGGGGGGGGGTCATAGTTGGGTTCCAGCTCCTGGCTTGATGAGCCCAGGGCGCTTACAGGCAGCCCATGAAGTTGATGACAGTTTTAGCATGAGAATCACACAGGGTCCCTGTCCTGGGCTCCTCTAAAGCCAGTGGATGTGCTGGGCACCAGAGACAAATCATGGAGATGGCTGCTGGTGGCTCCCAGGTTGGCCCAGATGGGGTGAGCTGACATACCACAGGCCCATCCCAGGCCCCGTGGGCTCTGCTTCTGGGGCTCCATACCCTGCCCTGCAGGGGTGCTGTGTTTTTCACACATTTCTTTCCCTGAAGCCTTCTGTAACCTGTCATTTTCCTTCCTTCCTCTTCCGGAGCCTGCTGCTTTCTCTGGACCTGTCTCCACCTCCCACACAGCTCATCGTGAACACCACTTGGTGATGGAGGGAGTGGACCCGTGTGTGGTCCCCAAGTGAGGCCACTGGGAGTTTGTCCTTTTCCTCCTTTGCTTCACTCCCAGCAGCAGACCCAGGTTGTCAGGACAGGAGGGCCTGAGCTAAGCAGTAGGCATCAGTCTCGTTTGTCTTCAGACGGCGGGGGCAGGTCCAGGGTGAGGCTGGGTGGAGGGCTGACCAAGGTCCAAAGGGCCTGCGCAGCCTCCGGGAGGGCAGCTTCTCCAGCCAGAGGCTTGTGTGAGCCATCGTGTGCTGGGCTTGTTTTTAAGTAAGAAACAAGGAAATCACTCCAGATTCTGTCATTCCAAGGAAAGGGAAGGGGACAGTTCAGGTTTCTCAGCTGTTCTTAGGGGTCACTGAGCGTCTACCTCCTCCTCCAGAGGAGGCTGGCTCAGAACACCTAGAGGAGGGGGCCGGGGATGCACCCCCCACCAGAGGCTGCCTTCAGCGTCTCACGGGTGCAGGACAGCGCTCAGGCTTGGGCTCTAAGCTCTGTGTCTAGTGTAGAACATGGGGAAGGAGCATCTTAGGAACTGCTGAAGTAACTTCTTACTGCTCTCACAATTCTAAGGAAGCGGGAGAACGGCCTCCTACCAACAGCGCCCACCCCAGAGCTGCCTGGGAAAGGGCAGTTTTACTGAAAGGTGCTTTACTGTTCACCTGCATCTTTCAGCAGCTCCCCTCCTGCCCTCACCTGGTCTTTTCCCTCTTTATCCCAAGCCTTTATGCTTGAGTCCCTTCCCCAGGGGCTGCCCACCCGACAGTTCCAGGCATTCCCTACCTGAGCTTCTTGTCTGCTTTTCCTTCTCCCACTGCAAGCGGCTGCTTGTGGGGCCTGGGATGAGCCCTCTCTGTCCCCACCGGCCCTCCTTGCCAAGCCATTCCTGGGTGAGTTCAGGCCTGCGGGAGCCACACATTCATCTCCACCTGGACACTTGAGCCGCATGGCCAGACCCCTCCCACCTGATGCGGTGGTGCGTGTGATTTGTCAAAAGAAAGCCTTCTGGATGCTGTTAAGATGTACCCTTCAGGTGAACCTGGTATCAGACCCACAGTACTTGCTGTTTGAGAAAAAATAAAAACAAAAAGGTCACCTGTTCTCCAGCCCTTTTCTCTTACCTGGTATTTCCTTCCTTTCTCCTCCCCCACCCCAAATAAAAAAACAAAAAACACTAGAATTTATTTATATGTATTGATGTTGTAGGTCTAGGTGAAAAAAAAAGAAGTAAATGTTTCACTGCTCTATTTATATATAATGTCTGAATTAATTCTGTGCAGGAAAGGCCAGGAAATTGCATGTGAAGTTCGGTGCAGTCACCACCTGTGTGTGACCTGAGCTGCAGTCTCTTCGCTGAGATGCAGGTTTTAAATGAGACTTGGGGGGCTGAGGGCAGGCCTCAGGCCTCCCAGCGCCCCAACCCCTCCTTGGTCTAATGAAATGCAGTTCTTAGTGCAGAGATGTTTTAAGGTGCAATATATCTCTTCCTTTCCCGTGGTTTTAGAGCCAAGCTCAAGGTAGTAGGACGTAGGGTCTTATTTTGTTTTCAAACCCCCATCCTCAGAGCGCAGATACATGCAGAGGCTTCTGCCAGGATACCACGGGGCCTTAGTGGGAACAGGTGGAGACCAGCACTTCCCTTTCCTGCTGCTGAGGTAGGGATTGGGGGGTCAGAACCCACTCACTTTTGCCTGTTAAAGTTGCCCTCCTGACGCTGGCAGCTCTGCCTTGGTCACTGGGGATGCGGCTCGTTGCTCAGCCACCAGTGGCCTTGCGGTATTGTCCACCATCCACTAGAGTGGGATGAAGTCCAGAGTGTGGGTATACATCTCAGATGCCCATCTACCCACTGGGGACTTCAATGCCAGCTGCATTTGGTTTGGTTTTCTTAACTGTTGGCTTCTCCCCACAGCGTTTTTTGTTTTTTTTTAAACATTCATATTGTTTTCAAACTTGGAATTCATAGACACTCTGGCTCTAGGTTCCTTAAGGGGGAAAACAAAAGATGACTTTATTTCACATTCAAGAAAATCAGTTCAGTTCCAAAGCTGTGGTCCTTCCAGCCACTTCTAGGGACACTGGGGAACCTTGTTAAACGTTGACATCAGTGCTCTCCAGCCGTGCTGTCACCCTCCTATCTTCTGGATCTGCCTTCGCGATGGTCAGTGACAGCTTCTGGAAGCTGAGCACACACAGGTGCACAGCCATGCTGTGGTCTGGCCTGCTACGGCAGCATGGCAGCTCTGGTGGAGCCTTCTCCCTTGCCATTTGGTTCCCCTGTGCCAAGTAGCTGCAGGCTGCCCCTCAAATCTTCATTTGTCCCTTTTCACTTCCTGCAGAACAAGCCTGGGTTAGAGGGTCTGCTGGAAATGGCCTTTGAAGACCAAGGATACCAGGATGTGTGCACTCTGTCGTGTTCTGTGATGAATGGGAAACGTAGGCTTCCAGAAAGCCAGCTCTCTTCTGAAATGTGACGGACCTAAGCAGGAAGTCATCCAGGACAGGAGTGGCTCAGTGTTGGGGATGGACGCTGTCGCCCAGCCATGCTCCACCAGGGCCACCAATGTGTAGTTGGCTGGTGGTCTTCGGGCATGTGAGACCTGCTCTTCACTGTTTCCACCCCACTTGGTGGCCTCCAGGATGGTAGTGGCACCCTCAGAGCCCCATCTTCAGCATGTTCTGAAGCCTCAGAGTGGAAATTCCTGCTAAGGCTCTGTGTGGACGCCTTTCTCCCGTGATCTAAAGGGGACACTGTACTCAAGCTTTTGACCTCATGCCTTGTGTAGTAAAAAAGGATTTGGGGGTTTTGTTTGGTTCCTGAGAGGGTTGTGTTTTGTTTTTGTTTCCTTTTGTTTATGTTTTGGCCTTTCCTCTTTGTCTTTCCATGTAGACCAGATATTTGAAAGGGCAGACGATGGCTAGAGGTGTAATGTGCAGCTTGTTTATACGGTATTTTGGGAAACTTACCTTGGATGGGAAATCGAATCGTGGATTCACCAGGCCGGTGCTGGCACACTCACCCTCGCCCTTTCCCTCCGGTTCAGTACCTATTGTTTCTCCTTTCAAATATGTGATTGTACTAGCTCTTTCCATATGAAAGAATTCTCCTTATTTAAATAAAAAAAGTTTAA
VastDB Features
Vast-tools module Information
Secondary ID
-BAT2L1:NM_013318:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGACACTACGTGCAACAG
R:
GCCATATATCCACGGGTGCAA
Band lengths:
342-1595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)