HsaINT0016691 @ hg38
Intron Retention
Gene
ENSG00000130723 | PRRC2B
Description
proline rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr9:131494405-131500197:+
Coord C1 exon
chr9:131494405-131494486
Coord A exon
chr9:131494487-131495739
Coord C2 exon
chr9:131495740-131500197
Length
1253 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
TCCCATTCATCTGTCCAAAGGCA
3' ss Score
7.39
Exon sequences
Seq C1 exon
GCCTAGCTCTGCTAGCCCCAGTGGGAAGCCCTCTGGATCAGCAGTTAACATGGGCTCTGTGCAGGGACACTACGTGCAACAG
Seq A exon
GTAGAAGATGGCTTTCCAGACCCTTCAGCCCTGGACACTTAGGCCCGTCTCCAAGCGCCAAAAGAGAAGGGACTGTCCAACCTATCTGAGCGCCCCCTGTCTAAAGACAGCCATGCCCTAGCGGTTAGAGCACAGAACCGGGAGCTGGGCCGCCCGCGTCCCTCCTGGCGAAGGCATTTCTCCTCTTGACGGGCGTCTGGATCCTTCCTTGTCCTGCAGAGAAGGGAGGATGCTGATTCCTCTGAGGAGGTGGTGCTGGAAGGTGGACCAGCCCTGGCAGGTCGGGGCTGAGGCGCCCTGGGAGACTCGGTTAGGTTTGGGGGTCGGCTTTAGGAGCCGGGGTGCGCGCGCTGGTTCTAGTCAGTGGTGTGTCTCATCTTTGTCTTGGCTGGGTGGGAGCACAGGTGAAATTAAGTTTTCCCATTTTATAATGAAAAGGACATCGCAGTGTCTTTTCCTGCACGCACTATTCTCTTCTCTATTCTCTAAAACGTGCTGGGGCTCAGAGCTTAAGCCCCTCAGACGTGGGTTTTTAATCAGTCACTGTGCCTGGCTGGTAGAGATGGGAAGTGATTGCTCTCATTGGTTCCCCTAGGGGTCATGAAAGTTGTGTGGAATGAGCTTCTAAAGCTTTCTTCCAGAGTTCAGACCTGGTGGGGGGCAGATGCGCTGGCTGCTCTGTGACTTCCCCACCCCACTCCCCGTGTAGAGCCACAGACCAGGGGAGCCCTGACTAGGAATGGGGCCCCAGGGAAAGGTTACAGAGTGGGAATGGTGGGGGGGTTGGCTGAATCGCGGCCAGAGATCTGTGGGGGCCAAGTCTGCCTAGGGCCCCAGCAGACAGTCGGGGGCTCCGAGACGTGCAGGGGGCACTTGGATCTACTTGAAGGGGCCTTTTTTGCCTGTGGGGCAGGAGGTGCACTGATTTGAAAAGGTTCTTCCAGTTGGCCTTGGGACCAGAACTGCTTCCGCCCTGGGATGTGCCATCGCGGAATTCTTTGTGGAGGACCCGGTGTCTTCCTGCCTCTCCGAATCACTGCACTCAGGGCTTATGGGGAGGGAGCAGAGACGGCACTCGCGCCACTTTCCTTACTAGGAGGGGGGTTTCTAAGTCTGGTCCTTCAACCAAGGGACTGACAACTTAGGGGAGCTTTCCCTGCAACTCAGGAGCAGGAAGGGAGTGGTGGGAACTATGTATCCAAACACGTTTCAGCGTCAGGGTCACTTTGTTTTTCCCATTCATCTGTCCAAAG
Seq C2 exon
GCAAAACAACGAGTGGATGAGAAACCCAGCCTGGGAGCCGTGAAGCTGCAGGAGGCCCCCTCGGCTGCCTCCCAGATGAAGCGAACCGGAGCGATCAAGCCTCGGGCTGTCAAAGTGGAGGAGAGTAAGGCCTGACAGTGCCTGGCTGCCACCTCGCCTCTCCCTACTGAGGACGGTGCCGCCATGCGGCCTCGACACAGCCGACACTCGGGAGCCTCACCAGATCCACCGTCCAAATGCGTGGCCCAGACTGAGAGACCTCCCTCCTCTCCACTCCCGAAAGCTCCGTTGTCAACCAGCTTGCACCCGTGGATATATGGCATTGACCCGCTTGCTTTGATACGAAACAAAAAAGCAGACGACTCCTTCATCCCATCTGCTCCTACCGTGACTGTGGAGTGACGCCTCCTGTGCAGTGCAGATTTGCCCTCCCTGCCTCCTCCCTGTCCTGCCGCGCAGCCAGGGCGCCTTCTCAGCAGTGCTTCCGGCCCAGCCGCCCATCCCTAGGCACAGTGATTTGGCAGCAGGGTCATTTTACTTTGAGGCTTTTTGTTTTAAAATGTAGCCAAGGTTTTTACAAAGGGGAAAGGAAAAGAAAACAAAAACGCAAGCTCCATGTGTATAGCTGAACTTTTATATGTTTCTTGCCAGCCCCTCCGCTCCCTTCCATCTCTAGCCTCTGTCCTGTTTAGTTTGATACGTCACTGCAGTACCTTAAGAGGTGACTCTTAAGAATGCATCCCCTCCTGATTCCTCAGCTGGTTCACCCTTGAGGTTATTTGCAAAAAGAAAAGGAGGTTCTTGAGGGCACCGATTGCGAGCATTCTGGTGCCTGGCTCCCCGCCTGGGAAGCGATGGGGTGCTCAGAGCAGCAGGCAGGTTGGGGGAGGGGGGGGGTCATAGTTGGGTTCCAGCTCCTGGCTTGATGAGCCCAGGGCGCTTACAGGCAGCCCATGAAGTTGATGACAGTTTTAGCATGAGAATCACACAGGGTCCCTGTCCTGGGCTCCTCTAAAGCCAGTGGATGTGCTGGGCACCAGAGACAAATCATGGAGATGGCTGCTGGTGGCTCCCAGGTTGGCCCAGATGGGGTGAGCTGACATACCACAGGCCCATCCCAGGCCCCGTGGGCTCTGCTTCTGGGGCTCCATACCCTGCCCTGCAGGGGTGCTGTGTTTTTCACACATTTCTTTCCCTGAAGCCTTCTGTAACCTGTCATTTTCCTTCCTTCCTCTTCCGGAGCCTGCTGCTTTCTCTGGACCTGTCTCCACCTCCCACACAGCTCATCGTGAACACCACTTGGTGATGGAGGGAGTGGACCCGTGTGTGGTCCCCAAGTGAGGCCACTGGGAGTTTGTCCTTTTCCTCCTTTGCTTCACTCCCAGCAGCAGACCCAGGTTGTCAGGACAGGAGGGCCTGAGCTAAGCAGTAGGCATCAGTCTCGTTTGTCTTCAGACGGCGGGGGCAGGTCCAGGGTGAGGCTGGGTGGAGGGCTGACCAAGGTCCAAAGGGCCTGCGCAGCCTCCGGGAGGGCAGCTTCTCCAGCCAGAGGCTTGTGTGAGCCATCGTGTGCTGGGCTTGTTTTTAAGTAAGAAACAAGGAAATCACTCCAGATTCTGTCATTCCAAGGAAAGGGAAGGGGACAGTTCAGGTTTCTCAGCTGTTCTTAGGGGTCACTGAGCGTCTACCTCCTCCTCCAGAGGAGGCTGGCTCAGAACACCTAGAGGAGGGGGCCGGGGATGCACCCCCCACCAGAGGCTGCCTTCAGCGTCTCACGGGTGCAGGACAGCGCTCAGGCTTGGGCTCTAAGCTCTGTGTCTAGTGTAGAACATGGGGAAGGAGCATCTTAGGAACTGCTGAAGTAACTTCTTACTGCTCTCACAATTCTAAGGAAGCGGGAGAACGGCCTCCTACCAACAGCGCCCACCCCAGAGCTGCCTGGGAAAGGGCAGTTTTACTGAAAGGTGCTTTACTGTTCACCTGCATCTTTCAGCAGCTCCCCTCCTGCCCTCACCTGGTCTTTTCCCTCTTTATCCCAAGCCTTTATGCTTGAGTCCCTTCCCCAGGGGCTGCCCACCCGACAGTTCCAGGCATTCCCTACCTGAGCTTCTTGTCTGCTTTTCCTTCTCCCACTGCAAGCGGCTGCTTGTGGGGCCTGGGATGAGCCCTCTCTGTCCCCACCGGCCCTCCTTGCCAAGCCATTCCTGGGTGAGTTCAGGCCTGCGGGAGCCACACATTCATCTCCACCTGGACACTTGAGCCGCATGGCCAGACCCCTCCCACCTGATGCGGTGGTGCGTGTGATTTGTCAAAAGAAAGCCTTCTGGATGCTGTTAAGATGTACCCTTCAGGTGAACCTGGTATCAGACCCACAGTACTTGCTGTTTGAGAAAAAATAAAAACAAAAAGGTCACCTGTTCTCCAGCCCTTTTCTCTTACCTGGTATTTCCTTCCTTTCTCCTCCCCCACCCCAAATAAAAAAACAAAAAACACTAGAATTTATTTATATGTATTGATGTTGTAGGTCTAGGTGAAAAAAAAAGAAGTAAATGTTTCACTGCTCTATTTATATATAATGTCTGAATTAATTCTGTGCAGGAAAGGCCAGGAAATTGCATGTGAAGTTCGGTGCAGTCACCACCTGTGTGTGACCTGAGCTGCAGTCTCTTCGCTGAGATGCAGGTTTTAAATGAGACTTGGGGGGCTGAGGGCAGGCCTCAGGCCTCCCAGCGCCCCAACCCCTCCTTGGTCTAATGAAATGCAGTTCTTAGTGCAGAGATGTTTTAAGGTGCAATATATCTCTTCCTTTCCCGTGGTTTTAGAGCCAAGCTCAAGGTAGTAGGACGTAGGGTCTTATTTTGTTTTCAAACCCCCATCCTCAGAGCGCAGATACATGCAGAGGCTTCTGCCAGGATACCACGGGGCCTTAGTGGGAACAGGTGGAGACCAGCACTTCCCTTTCCTGCTGCTGAGGTAGGGATTGGGGGGTCAGAACCCACTCACTTTTGCCTGTTAAAGTTGCCCTCCTGACGCTGGCAGCTCTGCCTTGGTCACTGGGGATGCGGCTCGTTGCTCAGCCACCAGTGGCCTTGCGGTATTGTCCACCATCCACTAGAGTGGGATGAAGTCCAGAGTGTGGGTATACATCTCAGATGCCCATCTACCCACTGGGGACTTCAATGCCAGCTGCATTTGGTTTGGTTTTCTTAACTGTTGGCTTCTCCCCACAGCGTTTTTTGTTTTTTTTTAAACATTCATATTGTTTTCAAACTTGGAATTCATAGACACTCTGGCTCTAGGTTCCTTAAGGGGGAAAACAAAAGATGACTTTATTTCACATTCAAGAAAATCAGTTCAGTTCCAAAGCTGTGGTCCTTCCAGCCACTTCTAGGGACACTGGGGAACCTTGTTAAACGTTGACATCAGTGCTCTCCAGCCGTGCTGTCACCCTCCTATCTTCTGGATCTGCCTTCGCGATGGTCAGTGACAGCTTCTGGAAGCTGAGCACACACAGGTGCACAGCCATGCTGTGGTCTGGCCTGCTACGGCAGCATGGCAGCTCTGGTGGAGCCTTCTCCCTTGCCATTTGGTTCCCCTGTGCCAAGTAGCTGCAGGCTGCCCCTCAAATCTTCATTTGTCCCTTTTCACTTCCTGCAGAACAAGCCTGGGTTAGAGGGTCTGCTGGAAATGGCCTTTGAAGACCAAGGATACCAGGATGTGTGCACTCTGTCGTGTTCTGTGATGAATGGGAAACGTAGGCTTCCAGAAAGCCAGCTCTCTTCTGAAATGTGACGGACCTAAGCAGGAAGTCATCCAGGACAGGAGTGGCTCAGTGTTGGGGATGGACGCTGTCGCCCAGCCATGCTCCACCAGGGCCACCAATGTGTAGTTGGCTGGTGGTCTTCGGGCATGTGAGACCTGCTCTTCACTGTTTCCACCCCACTTGGTGGCCTCCAGGATGGTAGTGGCACCCTCAGAGCCCCATCTTCAGCATGTTCTGAAGCCTCAGAGTGGAAATTCCTGCTAAGGCTCTGTGTGGACGCCTTTCTCCCGTGATCTAAAGGGGACACTGTACTCAAGCTTTTGACCTCATGCCTTGTGTAGTAAAAAAGGATTTGGGGGTTTTGTTTGGTTCCTGAGAGGGTTGTGTTTTGTTTTTGTTTCCTTTTGTTTATGTTTTGGCCTTTCCTCTTTGTCTTTCCATGTAGACCAGATATTTGAAAGGGCAGACGATGGCTAGAGGTGTAATGTGCAGCTTGTTTATACGGTATTTTGGGAAACTTACCTTGGATGGGAAATCGAATCGTGGATTCACCAGGCCGGTGCTGGCACACTCACCCTCGCCCTTTCCCTCCGGTTCAGTACCTATTGTTTCTCCTTTCAAATATGTGATTGTACTAGCTCTTTCCATATGAAAGAATTCTCCTTATTTAAATAAAAAAAGTTTAAAAAGATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130723:ENST00000405995:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGACACTACGTGCAACAG
R:
GCCATATATCCACGGGTGCAA
Band lengths:
342-1595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains