DreINT0017315 @ danRer10
Intron Retention
Gene
ENSDARG00000079639 | PRRC2B
Description
proline-rich coiled-coil 2B [Source:HGNC Symbol;Acc:HGNC:28121]
Coordinates
chr5:71239213-71239863:-
Coord C1 exon
chr5:71239785-71239863
Coord A exon
chr5:71239450-71239784
Coord C2 exon
chr5:71239213-71239449
Length
335 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGG
5' ss Score
10.88
3' ss Seq
ATCTGTGTGTGTGTGTGCAGGTG
3' ss Score
10.5
Exon sequences
Seq C1 exon
GCCCGGCTCTGCCAGCCCCAGTGGGAAAGCGTCGGGTGCTCCAGCGGTGGCGTCTCTTGCAGGACACTACACACAGCAG
Seq A exon
GTACGGCTGTACTGATGACTGAACCAACAATAAACAATTCACAATCAGTGCAAACAGCAAACAGCAGTCACTGGCAACCAGGTTTAAGATGACGACTAGCGCAAACGCTGAATAGTGTTCTGAATTAATCAGCGGTCATCCTGTGAAATCTGTTCTGAGAAACACCAGTAGATGGCGCCAAACACATCAGTCAACAGCAGGATTATATACACAAACACAGTTACTATATTAGCATAACACATGTTCTCACTCACTGACCTCTTTTCGTGTGTGTGTGTGTGCGTGTGTTTGTGCTTGTGTTTTATCTATCTGTATATCTGTGTGTGTGTGTGCAG
Seq C2 exon
GTGTCGGGTCCTCAGGGCAGTATGGTGATGCACATGCGTCCCCCCAGCAGCGGGCCCTTCCCCACCCCCATCCAGCGGCCCATCATGCAGGTCAACAAGCCCGTGATCATCCGCTCCCCGCCGTACCCCGGCCCAAACACCGGCCCCGCACACACACACGCACACACACACAACCCTGAGGGCCCCGGCAAGGGCCCGGAGGACGGCCTGAAGGTGAGCCACCCACTCTGAGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079639:ENSDART00000112955:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCAGCCCCAGTGG
R:
CTATGCTCAGAGTGGGTGGCT
Band lengths:
310-645
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]